Non-Coding RNA Search

Ss1.1-Ova1-OVRM10039A08.5

Sequence:


               
               CCTGCGCCTGGGCCGCCGGGGACCCGGGCTGGGGCAGCCGGATGGGCTAAGGTTGCGGAG
GAGGCGGTGGGTGGTGCGGCGGCGCGCGGGAGGGCGCCGACACCCTGAGGCCGCCGTCGG
GGCGAGGTGTCCTCATGACTTCTTTTGCGGACCATGTCCATGATCCTTTTTGCCTGTGTG
GTAAGGGTGAGGGATGGACTGCCTCTCTCGGCCTCCACTGACTTTTACCACACCCAAGAT
TTTCTGGAATGCAGGAGACGGCTCAAGACTTTAGCCTTGCGATTGGCCCAGTATCCAGGT
CGAGGTTCTGCAAAAGGACGTGACTTCAGTATCCATTTCTCTTCTTCGAGGGATGTGGCC
TGCATGGCTATCTGCTCCCACCAGTGTCCATCTGCCATGGCCTTCTACTTCCTGGAGACC
CTGTGGTGGGAATTCACAGCTTCCTATGATACCACCTGCATTGGCCTAGCCTCCAGGCCA
TACGCCTTTCTCGAATTTGACAGTGTCATTCAGAAAGTGAAGTGGCATTTTAACTATGTA
AGTTCTACCCAGATGGAGAACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGCCTGGGCCGCCGGGGACCCGGGCTGGGGCAGCCGGATGGGCTAAGGTTGCGGAG
GAGGCGGTGGGTGGTGCGGCGGCGCGCGGGAGGGCGCCGACACCCTGAGGCCGCCGTCGG
GGCGAGGTGTCCTCATGACTTCTTTTGCGGACCATGTCCATGATCCTTTTTGCCTGTGTG
GTAAGGGTGAGGGATGGACTGCCTCTCTCGGCCTCCACTGACTTTTACCACACCCAAGAT
TTTCTGGAATGCAGGAGACGGCTCAAGACTTTAGCCTTGCGATTGGCCCAGTATCCAGGT
CGAGGTTCTGCAAAAGGACGTGACTTCAGTATCCATTTCTCTTCTTCGAGGGATGTGGCC
TGCATGGCTATCTGCTCCCACCAGTGTCCATCTGCCATGGCCTTCTACTTCCTGGAGACC
CTGTGGTGGGAATTCACAGCTTCCTATGATACCACCTGCATTGGCCTAGCCTCCAGGCCA
TACGCCTTTCTCGAATTTGACAGTGTCATTCAGAAAGTGAAGTGGCATTTTAACTATGTA
AGTTCTACCCAGATGGAGAACAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17391033|gb|AAH18437.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17391033|gb|AAH18437.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               165-284, - strand, RNAz p=0.576203
               

               
               340-457, - strand, RNAz p=0.694525
               

               
               377-499, - strand, RNAz p=0.91131

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-284, - strand, RNAz p=0.576203
               

               
               340-457, - strand, RNAz p=0.694525
               

               
               377-499, - strand, RNAz p=0.91131

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               125-335, gnl|bosTau2|chr22 (7593132-7592922)
               

               
               125-335, gnl|Hg17|chr3 (42585571-42585361)
               

               
               125-335, gnl|Mm7|chr9 (121397776-121397566)
               


               
               337-499, gnl|bosTau2|chr22 (7591073-7590911)
               

               
               337-499, gnl|canFam2|chr23 (14733721-14733923)
               

               
               337-499, gnl|danRer3|chr24 (9627455-9627277)
               

               
               337-499, gnl|echTel1|scaffold_307139 (9128-9330)
               

               
               337-499, gnl|fr1|chrUn (122682015-122681845)
               

               
               337-499, gnl|galGal2|chr2 (1461660-1461859)
               

               
               337-499, gnl|hg17|chr3 (42579995-42580197)
               

               
               337-499, gnl|Hg17|chr3 (42580181-42580019)
               

               
               337-499, gnl|mm7|chr9 (121394787-121394988)
               

               
               337-499, gnl|Mm7|chr9 (121394973-121394811)
               

               
               337-499, gnl|monDom2|scaffold_5 (77593606-77593808)
               

               
               337-499, gnl|oryCun1|scaffold_212685 (63895-63692)
               

               
               337-499, gnl|panTro1|chr2 (43779770-43779972)
               

               
               337-499, gnl|rheMac2|chr2 (94011816-94011614)
               

               
               337-499, gnl|tetNig1|chr6 (3075245-3075421)
               

               
               337-499, gnl|xenTro1|scaffold_451 (150521-150726)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-335, gnl|bosTau2|chr22 (7593132-7592922)
               

               
               125-335, gnl|Hg17|chr3 (42585571-42585361)
               

               
               125-335, gnl|Mm7|chr9 (121397776-121397566)
               


               
               337-499, gnl|bosTau2|chr22 (7591073-7590911)
               

               
               337-499, gnl|canFam2|chr23 (14733721-14733923)
               

               
               337-499, gnl|danRer3|chr24 (9627455-9627277)
               

               
               337-499, gnl|echTel1|scaffold_307139 (9128-9330)
               

               
               337-499, gnl|fr1|chrUn (122682015-122681845)
               

               
               337-499, gnl|galGal2|chr2 (1461660-1461859)
               

               
               337-499, gnl|hg17|chr3 (42579995-42580197)
               

               
               337-499, gnl|Hg17|chr3 (42580181-42580019)
               

               
               337-499, gnl|mm7|chr9 (121394787-121394988)
               

               
               337-499, gnl|Mm7|chr9 (121394973-121394811)
               

               
               337-499, gnl|monDom2|scaffold_5 (77593606-77593808)
               

               
               337-499, gnl|oryCun1|scaffold_212685 (63895-63692)
               

               
               337-499, gnl|panTro1|chr2 (43779770-43779972)
               

               
               337-499, gnl|rheMac2|chr2 (94011816-94011614)
               

               
               337-499, gnl|tetNig1|chr6 (3075245-3075421)
               

               
               337-499, gnl|xenTro1|scaffold_451 (150521-150726)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	165-284, - strand, RNAz p=0.576203
	340-457, - strand, RNAz p=0.694525
	377-499, - strand, RNAz p=0.91131

	125-335, gnl\|bosTau2\|chr22 (7593132-7592922)
	125-335, gnl\|Hg17\|chr3 (42585571-42585361)
	125-335, gnl\|Mm7\|chr9 (121397776-121397566)

	337-499, gnl\|bosTau2\|chr22 (7591073-7590911)
	337-499, gnl\|canFam2\|chr23 (14733721-14733923)
	337-499, gnl\|danRer3\|chr24 (9627455-9627277)
	337-499, gnl\|echTel1\|scaffold_307139 (9128-9330)
	337-499, gnl\|fr1\|chrUn (122682015-122681845)
	337-499, gnl\|galGal2\|chr2 (1461660-1461859)
	337-499, gnl\|hg17\|chr3 (42579995-42580197)
	337-499, gnl\|Hg17\|chr3 (42580181-42580019)
	337-499, gnl\|mm7\|chr9 (121394787-121394988)
	337-499, gnl\|Mm7\|chr9 (121394973-121394811)
	337-499, gnl\|monDom2\|scaffold_5 (77593606-77593808)
	337-499, gnl\|oryCun1\|scaffold_212685 (63895-63692)
	337-499, gnl\|panTro1\|chr2 (43779770-43779972)
	337-499, gnl\|rheMac2\|chr2 (94011816-94011614)
	337-499, gnl\|tetNig1\|chr6 (3075245-3075421)
	337-499, gnl\|xenTro1\|scaffold_451 (150521-150726)