Non-Coding RNA Search

Ss1.1-Ova1-OVRM10039B12.5

Sequence:


               
               GAAGATGGCGGCCTCCTGGAGGCTAGGCTGTGACCCGCGGGTGATGCGTTGCCTCCTGGG
CTTTGGCAACTGCCCGGGGCTGGTGAAGGGAGCTGCTGGATGGTCTCTCGGCCGCGGAGC
TAGTTGGAGATGGTATCACAGCACGCAGTCTCTTTGGGCTGATCCTATTAAGATATTAAT
GCCATCCCTGTCTCCTACGATGGAAGAAGGAAACATTGTAAAGTGGCTGAAAAAGGAAGG
TGAAGCTGTGAGTGCTGGAGATGCCTTGTGTGAAATAGAGACTGACAAAGCTGTGGTTAC
CTTAGATGCAAGTGATGATGGCATCTTGGCCAAAATAGTGGTTGCCGAAGGATCTAAAAA
TATACGGCTAGGTTCCCTCATTGGGTTGCTAGTTGAAGAAGGAGAAGATTGGAAACATGT
TGAAATTCCCAAAGACGTAGGTCCTCCGTCACCAGCTTCAAAACCATCAGTGCCTCCTCC
CCCCTCACCACAACCACAGATTTCTACCCCTGTCAAAAAAGAACACACACCGGGAAAACT
GCAGTTCCGTTTAAGTCCAGCTGCTCGCAATATTCTGGAAAAACATGCACTGGATGCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGGCGGCCTCCTGGAGGCTAGGCTGTGACCCGCGGGTGATGCGTTGCCTCCTGGG
CTTTGGCAACTGCCCGGGGCTGGTGAAGGGAGCTGCTGGATGGTCTCTCGGCCGCGGAGC
TAGTTGGAGATGGTATCACAGCACGCAGTCTCTTTGGGCTGATCCTATTAAGATATTAAT
GCCATCCCTGTCTCCTACGATGGAAGAAGGAAACATTGTAAAGTGGCTGAAAAAGGAAGG
TGAAGCTGTGAGTGCTGGAGATGCCTTGTGTGAAATAGAGACTGACAAAGCTGTGGTTAC
CTTAGATGCAAGTGATGATGGCATCTTGGCCAAAATAGTGGTTGCCGAAGGATCTAAAAA
TATACGGCTAGGTTCCCTCATTGGGTTGCTAGTTGAAGAAGGAGAAGATTGGAAACATGT
TGAAATTCCCAAAGACGTAGGTCCTCCGTCACCAGCTTCAAAACCATCAGTGCCTCCTCC
CCCCTCACCACAACCACAGATTTCTACCCCTGTCAAAAAAGAACACACACCGGGAAAACT
GCAGTTCCGTTTAAGTCCAGCTGCTCGCAATATTCTGGAAAAACATGCACTGGATGCTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842949|ref|XP_612499.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842949|ref|XP_612499.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-162, gnl|bosTau2|chr15 (40216303-40216136)
               

               
               1-162, gnl|Hg17|chr11 (34894775-34894942)
               

               
               1-162, gnl|Mm7|chr2 (102924240-102924073)
               


               
               333-545, gnl|bosTau2|chr15 (40167685-40167476)
               

               
               333-545, gnl|Hg17|chr11 (34935499-34935708)
               

               
               333-545, gnl|Mm7|chr2 (102893188-102892979)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr15 (40216303-40216136)
               

               
               1-162, gnl|Hg17|chr11 (34894775-34894942)
               

               
               1-162, gnl|Mm7|chr2 (102924240-102924073)
               


               
               333-545, gnl|bosTau2|chr15 (40167685-40167476)
               

               
               333-545, gnl|Hg17|chr11 (34935499-34935708)
               

               
               333-545, gnl|Mm7|chr2 (102893188-102892979)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-162, gnl\|bosTau2\|chr15 (40216303-40216136)
	1-162, gnl\|Hg17\|chr11 (34894775-34894942)
	1-162, gnl\|Mm7\|chr2 (102924240-102924073)

	333-545, gnl\|bosTau2\|chr15 (40167685-40167476)
	333-545, gnl\|Hg17\|chr11 (34935499-34935708)
	333-545, gnl\|Mm7\|chr2 (102893188-102892979)