Non-Coding RNA Search

Ss1.1-Ova1-OVRM10039C08.5

Sequence:


               
               TAGCTTTTCAGAGTTTGTTTATTTTTGTCAGTTACAGTCCTAGATATACTTACTGCTGGT
ACAGTTGTACTCTAAGATTTGTGTTTGATATTCACGTTACTCCCAAGTGGCGCGGGCCCT
GGAGAAGGGCAGGCGAGTGGCTGGTCAGCCGTGGGTAGGATGCTGGAGTTTTTGGCCACA
GGCTGACCTCATCATTTATTTTTTGCATCCGTCTGCTTATTACGCATCTTAGGGGAGCTG
GCATTTGTGTCTTCCAGCCCCCTCCTCGCAGAAACTGCTCCCTTTGAACTCTTGGCTGAA
CAGCAGATTCCTGACAATCTGTGATACGGGATTTTGTACATGTCCTTGTACACCGCAGCC
AAGGCAGCATACATTCCTCTGACTTTACACAGTTACAACAGCATTTATTATCGTTTGCTC
TAGTAATAGCTACTAACTAGAAATTAGGTGAAGAAGAAAGCATGACAGACCCAGCTGTGG
ATGTTCAACAGCTGCTCCTCTTGATAAATGTTTCTATGCGCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCTTTTCAGAGTTTGTTTATTTTTGTCAGTTACAGTCCTAGATATACTTACTGCTGGT
ACAGTTGTACTCTAAGATTTGTGTTTGATATTCACGTTACTCCCAAGTGGCGCGGGCCCT
GGAGAAGGGCAGGCGAGTGGCTGGTCAGCCGTGGGTAGGATGCTGGAGTTTTTGGCCACA
GGCTGACCTCATCATTTATTTTTTGCATCCGTCTGCTTATTACGCATCTTAGGGGAGCTG
GCATTTGTGTCTTCCAGCCCCCTCCTCGCAGAAACTGCTCCCTTTGAACTCTTGGCTGAA
CAGCAGATTCCTGACAATCTGTGATACGGGATTTTGTACATGTCCTTGTACACCGCAGCC
AAGGCAGCATACATTCCTCTGACTTTACACAGTTACAACAGCATTTATTATCGTTTGCTC
TAGTAATAGCTACTAACTAGAAATTAGGTGAAGAAGAAAGCATGACAGACCCAGCTGTGG
ATGTTCAACAGCTGCTCCTCTTGATAAATGTTTCTATGCGCCCCCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               153-265, + strand, RNAz p=0.990376

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-265, + strand, RNAz p=0.990376

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_014667, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014667, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-496, gnl|bosTau2|chr22 (45120175-45119687)
               

               
               4-496, gnl|Hg17|chr3 (11574137-11573637)
               

               
               4-496, gnl|Mm7|chr6 (114886968-114886559)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-496, gnl|bosTau2|chr22 (45120175-45119687)
               

               
               4-496, gnl|Hg17|chr3 (11574137-11573637)
               

               
               4-496, gnl|Mm7|chr6 (114886968-114886559)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	4-496, gnl\|bosTau2\|chr22 (45120175-45119687)
	4-496, gnl\|Hg17\|chr3 (11574137-11573637)
	4-496, gnl\|Mm7\|chr6 (114886968-114886559)