Ss1.1-Ova1-OVRM10042E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCAAAATGCCAAGCAAGCACTGAGAAACATGATCAACTCATCTTGTGATCAGCCTATT GGCTACCCAATCTTTGTTTCACCCCTGACAACTTCTTACTCTGACAGCCATGAACAGCTT AAAGAAATTCTTGGGGGACCTATCAGTTTGGGAAATATCCGAAACTTTATAGTGTCAACC TGGCACAGGTTAAGAAAAGGTTGTGGAGCTGGATGTAACAGTGGTGGCAATATTGAAGAC TCTGACACTGGAGGTGGAACTTCCTGCACTAGTAACAATGCAACAACTGCCAATGACGCC CACAGCAATGTGTCCCAAGGGGGCACTGGAAACCCAGGCCAGGGATCCTCGGGAGCAGGA CTCCATCCTCCTGTCACCTCCTTCCCTCCAACACTAGGCACTAGCCACAGCTCTCACTCT GTGCAGTCCGGCCTGGTCAGACAGTCCCCTGCCCGGGCCTCCGTGGCTAGCCAGTCTTCA TACTGCTATAGCAGCCGGCACTCATCTCTCCGGATGTCCACCACGGGATTTGTGCCTTGT CGGCGCTCTTCCACTAGCCAGATATCACTTCGAAACTTACCGTCATCCATCCAGTCCCGC CTGTCCATGGTGAACCAGATGGAACCCTCCAGTCAGAGTGGCATGGCCTGTGTGCAGCAC GGCCTGCCTTCCTCTAGCAGCTCCAGCCAAAGCATCCCAGCCTGCAAACACCACACCCTC GTGGGCTTTCTGGGGACAGATGGAGGTCAGAGCAGCATCTCTGACACACAGCCCGGCAAC ACCTTAAGTCCTGCCAATAATTCACATGCCAAAAAGGGGGAGGTGATTTACAGAGTCCAA ATTGTGGATCCCAGTCAAATTCTGGATGGGATCAACCTGTCAAAAAGGAAAGAGCTGCAG TGGCCTGATGAGGGTATTCGGTTAAAAGCTGGGAGAAACAGCTGGAAAGACTGGAGTCCT CAGGAGGGCATGGAAGGCCATGTGATTCACCGATGGGTGCCTTGCAGCAGAGATCCAGGT ACTAGATCCCACATCGACAAGACAGTCCTTCTGGTCCAGATTGAAGATAAATACGTGACA GTAATTGAAACTGGGGTACTAGAACTTGGGGCTGAAGTGTGAGCCAGTGTTTTATAACTT CATTTCTTTTCCCTCAAAACTCCAAGACTTTGGGGAAAAAAGGGGAGAGCAGAAGATGCC TGCAGGTACCACTTTGATCCTGTAGGAGAGACTTGAACATAAAGTGGGCTTGGTTTGGTT AAGCACCACTCCTTCGCCCCTCACCCTGACTCCTGTCCTGTCTCCATCCCCAAATAAAGC TGAAATATTTTTTTAAGTTAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCAAAATGCCAAGCAAGCACTGAGAAACATGATCAACTCATCTTGTGATCAGCCTATT GGCTACCCAATCTTTGTTTCACCCCTGACAACTTCTTACTCTGACAGCCATGAACAGCTT AAAGAAATTCTTGGGGGACCTATCAGTTTGGGAAATATCCGAAACTTTATAGTGTCAACC TGGCACAGGTTAAGAAAAGGTTGTGGAGCTGGATGTAACAGTGGTGGCAATATTGAAGAC TCTGACACTGGAGGTGGAACTTCCTGCACTAGTAACAATGCAACAACTGCCAATGACGCC CACAGCAATGTGTCCCAAGGGGGCACTGGAAACCCAGGCCAGGGATCCTCGGGAGCAGGA CTCCATCCTCCTGTCACCTCCTTCCCTCCAACACTAGGCACTAGCCACAGCTCTCACTCT GTGCAGTCCGGCCTGGTCAGACAGTCCCCTGCCCGGGCCTCCGTGGCTAGCCAGTCTTCA TACTGCTATAGCAGCCGGCACTCATCTCTCCGGATGTCCACCACGGGATTTGTGCCTTGT CGGCGCTCTTCCACTAGCCAGATATCACTTCGAAACTTACCGTCATCCATCCAGTCCCGC CTGTCCATGGTGAACCAGATGGAACCCTCCAGTCAGAGTGGCATGGCCTGTGTGCAGCAC GGCCTGCCTTCCTCTAGCAGCTCCAGCCAAAGCATCCCAGCCTGCAAACACCACACCCTC GTGGGCTTTCTGGGGACAGATGGAGGTCAGAGCAGCATCTCTGACACACAGCCCGGCAAC ACCTTAAGTCCTGCCAATAATTCACATGCCAAAAAGGGGGAGGTGATTTACAGAGTCCAA ATTGTGGATCCCAGTCAAATTCTGGATGGGATCAACCTGTCAAAAAGGAAAGAGCTGCAG TGGCCTGATGAGGGTATTCGGTTAAAAGCTGGGAGAAACAGCTGGAAAGACTGGAGTCCT CAGGAGGGCATGGAAGGCCATGTGATTCACCGATGGGTGCCTTGCAGCAGAGATCCAGGT ACTAGATCCCACATCGACAAGACAGTCCTTCTGGTCCAGATTGAAGATAAATACGTGACA GTAATTGAAACTGGGGTACTAGAACTTGGGGCTGAAGTGTGAGCCAGTGTTTTATAACTT CATTTCTTTTCCCTCAAAACTCCAAGACTTTGGGGAAAAAAGGGGAGAGCAGAAGATGCC TGCAGGTACCACTTTGATCCTGTAGGAGAGACTTGAACATAAAGTGGGCTTGGTTTGGTT AAGCACCACTCCTTCGCCCCTCACCCTGACTCCTGTCCTGTCTCCATCCCCAAATAAAGC TGAAATATTTTTTTAAGTTAGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 579-698, - strand, RNAz p=0.511189 | |
| 639-840, - strand, RNAz p=0.610784 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 579-698, - strand, RNAz p=0.511189 | |
| 639-840, - strand, RNAz p=0.610784 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-190, gnl|bosTau2|chr10 (58001166-58001355) | |
| 1-190, gnl|canFam2|chr8 (47750924-47751226) | |
| 1-190, gnl|danRer3|chr13 (38720215-38719915) | |
| 1-190, gnl|dasNov1|scaffold_39619 (4270-3969) | |
| 1-190, gnl|echTel1|scaffold_308277 (48288-48590) | |
| 1-190, gnl|fr1|chrUn (2944686-2944974) | |
| 1-190, gnl|galGal2|chrUn (29740109-29740420) | |
| 1-190, gnl|hg17|chr14 (70639841-70640143) | |
| 1-190, gnl|Hg17|chr14 (70639952-70640141) | |
| 1-190, gnl|loxAfr1|scaffold_190 (48993-48704) | |
| 1-190, gnl|mm7|chr12 (79953610-79953907) | |
| 1-190, gnl|Mm7|chr12 (79953716-79953905) | |
| 1-190, gnl|monDom2|scaffold_8 (64673523-64673229) | |
| 1-190, gnl|oryCun1|scaffold_167583 (113810-114112) | |
| 1-190, gnl|panTro1|chr15 (70411190-70411492) | |
| 1-190, gnl|rheMac2|chr7 (134192004-134192306) | |
| 1-190, gnl|rn3|chr6 (105861092-105861377) | |
| 1-190, gnl|tetNig1|chr10 (11483431-11483711) | |
| 1-190, gnl|xenTro1|scaffold_218 (983719-984015) | |
| 380-840, gnl|bosTau2|chr10 (58005044-58005504) | |
| 380-840, gnl|canFam2|chr8 (47756349-47756666) | |
| 380-840, gnl|danRer3|chr13 (38718192-38717898) | |
| 380-840, gnl|dasNov1|scaffold_37695 (47289-46972) | |
| 380-840, gnl|echTel1|scaffold_308277 (51538-51855) | |
| 380-840, gnl|fr1|chrUn (2945405-2945687) | |
| 380-840, gnl|galGal2|chrUn (21126913-21126598) | |
| 380-840, gnl|hg17|chr14 (70645059-70645374) | |
| 380-840, gnl|Hg17|chr14 (70645058-70645516) | |
| 380-840, gnl|loxAfr1|scaffold_190 (45751-45435) | |
| 380-840, gnl|mm7|chr12 (79956727-79957043) | |
| 380-840, gnl|Mm7|chr12 (79956726-79957185) | |
| 380-840, gnl|monDom2|scaffold_8 (64663902-64663587) | |
| 380-840, gnl|oryCun1|scaffold_167583 (118945-119260) | |
| 380-840, gnl|panTro1|chr15 (70416520-70416835) | |
| 380-840, gnl|rheMac2|chr7 (134197193-134197508) | |
| 380-840, gnl|rn3|chr6 (105864519-105864835) | |
| 380-840, gnl|tetNig1|chr10 (11484011-11484290) | |
| 380-840, gnl|xenTro1|scaffold_218 (985570-985873) | |
| 979-1344, gnl|bosTau2|chr10 (58006233-58006596) | |
| 979-1344, gnl|Hg17|chr14 (70646262-70646628) | |
| 979-1344, gnl|Mm7|chr12 (79957874-79958221) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-190, gnl|bosTau2|chr10 (58001166-58001355) | |
| 1-190, gnl|canFam2|chr8 (47750924-47751226) | |
| 1-190, gnl|danRer3|chr13 (38720215-38719915) | |
| 1-190, gnl|dasNov1|scaffold_39619 (4270-3969) | |
| 1-190, gnl|echTel1|scaffold_308277 (48288-48590) | |
| 1-190, gnl|fr1|chrUn (2944686-2944974) | |
| 1-190, gnl|galGal2|chrUn (29740109-29740420) | |
| 1-190, gnl|hg17|chr14 (70639841-70640143) | |
| 1-190, gnl|Hg17|chr14 (70639952-70640141) | |
| 1-190, gnl|loxAfr1|scaffold_190 (48993-48704) | |
| 1-190, gnl|mm7|chr12 (79953610-79953907) | |
| 1-190, gnl|Mm7|chr12 (79953716-79953905) | |
| 1-190, gnl|monDom2|scaffold_8 (64673523-64673229) | |
| 1-190, gnl|oryCun1|scaffold_167583 (113810-114112) | |
| 1-190, gnl|panTro1|chr15 (70411190-70411492) | |
| 1-190, gnl|rheMac2|chr7 (134192004-134192306) | |
| 1-190, gnl|rn3|chr6 (105861092-105861377) | |
| 1-190, gnl|tetNig1|chr10 (11483431-11483711) | |
| 1-190, gnl|xenTro1|scaffold_218 (983719-984015) | |
| 380-840, gnl|bosTau2|chr10 (58005044-58005504) | |
| 380-840, gnl|canFam2|chr8 (47756349-47756666) | |
| 380-840, gnl|danRer3|chr13 (38718192-38717898) | |
| 380-840, gnl|dasNov1|scaffold_37695 (47289-46972) | |
| 380-840, gnl|echTel1|scaffold_308277 (51538-51855) | |
| 380-840, gnl|fr1|chrUn (2945405-2945687) | |
| 380-840, gnl|galGal2|chrUn (21126913-21126598) | |
| 380-840, gnl|hg17|chr14 (70645059-70645374) | |
| 380-840, gnl|Hg17|chr14 (70645058-70645516) | |
| 380-840, gnl|loxAfr1|scaffold_190 (45751-45435) | |
| 380-840, gnl|mm7|chr12 (79956727-79957043) | |
| 380-840, gnl|Mm7|chr12 (79956726-79957185) | |
| 380-840, gnl|monDom2|scaffold_8 (64663902-64663587) | |
| 380-840, gnl|oryCun1|scaffold_167583 (118945-119260) | |
| 380-840, gnl|panTro1|chr15 (70416520-70416835) | |
| 380-840, gnl|rheMac2|chr7 (134197193-134197508) | |
| 380-840, gnl|rn3|chr6 (105864519-105864835) | |
| 380-840, gnl|tetNig1|chr10 (11484011-11484290) | |
| 380-840, gnl|xenTro1|scaffold_218 (985570-985873) | |
| 979-1344, gnl|bosTau2|chr10 (58006233-58006596) | |
| 979-1344, gnl|Hg17|chr14 (70646262-70646628) | |
| 979-1344, gnl|Mm7|chr12 (79957874-79958221) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ese (0.126502) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ese (0.126502) |