Non-Coding RNA Search

Ss1.1-Ova1-OVRM10042G05.5

Sequence:


               
               TAACAGTGAAGGCTAAAGGAGATACACTGATTCTAGGTACATTTTTTAACTTTCTAGAAG
CTAAATCAAACACTAATTAGACTAAGAAGCTGTAGTTTCTAATTGAGAACAAGCAATCGT
GGAAGCGCGGTGATGCGCAGATGCAGTCTTAGTAAAGCGTATCAGAGCAGCGCAGAGAGC
AGGCATGTGTCACTCAGATCGGCTGGAATCCACTAGGAAGCGTTTGAGAGAAGGACTGAC
CAACTGTGAAGCTAGCGCTAGACATCTGGGAATGCGCACGCCTGTTGGATACTGCAGGGG
AGGCCGGGGATTGCGGGAGACGCCCGGGTTTCCCAGGCAGTCGTTGGCGAGGGAGTTGCT
CTGCCAGGAGGGACACGTGCTCTCGGAGTCAAGGTCACTTAGAGGGCCCGTGATGCCATT
TGCGCCAGAAAGCATTTTCTCCCCTGTGCTTGGAACCCTTTTTCCCTTCTTGATCTTATC
ACCTCTGATGGCTGAAGAATGTAGACAGGTGTAACGATCCTGCTTTTCACCAAAATTTGT
ACACCAAGGTAAAAAGGTGGTTTGCCTTATTTTAATTTTTTTACCTTCAGTTCTACGTGG
ATTTGCTTTCTCTCGGATGTTAAAACCTCGAATGTCCTTTTATGATTTTGTTTCTATTGC
CGTAGTATTTATTTTTTAGTGATGAGAATTGTATGTCATGTTAGCCAATGCACTCCAACT
TCACATAAAAGAGACGTCCTGCAGTTTATTTCGACCCATGTGCAAGGAATGTACACGCTG
ATGAGAGTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACAGTGAAGGCTAAAGGAGATACACTGATTCTAGGTACATTTTTTAACTTTCTAGAAG
CTAAATCAAACACTAATTAGACTAAGAAGCTGTAGTTTCTAATTGAGAACAAGCAATCGT
GGAAGCGCGGTGATGCGCAGATGCAGTCTTAGTAAAGCGTATCAGAGCAGCGCAGAGAGC
AGGCATGTGTCACTCAGATCGGCTGGAATCCACTAGGAAGCGTTTGAGAGAAGGACTGAC
CAACTGTGAAGCTAGCGCTAGACATCTGGGAATGCGCACGCCTGTTGGATACTGCAGGGG
AGGCCGGGGATTGCGGGAGACGCCCGGGTTTCCCAGGCAGTCGTTGGCGAGGGAGTTGCT
CTGCCAGGAGGGACACGTGCTCTCGGAGTCAAGGTCACTTAGAGGGCCCGTGATGCCATT
TGCGCCAGAAAGCATTTTCTCCCCTGTGCTTGGAACCCTTTTTCCCTTCTTGATCTTATC
ACCTCTGATGGCTGAAGAATGTAGACAGGTGTAACGATCCTGCTTTTCACCAAAATTTGT
ACACCAAGGTAAAAAGGTGGTTTGCCTTATTTTAATTTTTTTACCTTCAGTTCTACGTGG
ATTTGCTTTCTCTCGGATGTTAAAACCTCGAATGTCCTTTTATGATTTTGTTTCTATTGC
CGTAGTATTTATTTTTTAGTGATGAGAATTGTATGTCATGTTAGCCAATGCACTCCAACT
TCACATAAAAGAGACGTCCTGCAGTTTATTTCGACCCATGTGCAAGGAATGTACACGCTG
ATGAGAGTCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-593, + strand, RNAz p=0.7926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-593, + strand, RNAz p=0.7926

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005465, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005465, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               28-792, gnl|bosTau2|chr16 (18781416-18782193)
               

               
               28-792, gnl|Hg17|chr1 (239994220-239993450)
               

               
               28-792, gnl|Mm7|chr1 (176991287-176990545)
               


               
               319-790, gnl|bosTau2|chr14 (41427631-41427150)
               

               
               319-790, gnl|Hg17|chr1 (239993923-239993452)
               

               
               319-790, gnl|Mm7|chr1 (176990997-176990547)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-792, gnl|bosTau2|chr16 (18781416-18782193)
               

               
               28-792, gnl|Hg17|chr1 (239994220-239993450)
               

               
               28-792, gnl|Mm7|chr1 (176991287-176990545)
               


               
               319-790, gnl|bosTau2|chr14 (41427631-41427150)
               

               
               319-790, gnl|Hg17|chr1 (239993923-239993452)
               

               
               319-790, gnl|Mm7|chr1 (176990997-176990547)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               spc (0.113366)

	28-792, gnl\|bosTau2\|chr16 (18781416-18782193)
	28-792, gnl\|Hg17\|chr1 (239994220-239993450)
	28-792, gnl\|Mm7\|chr1 (176991287-176990545)

	319-790, gnl\|bosTau2\|chr14 (41427631-41427150)
	319-790, gnl\|Hg17\|chr1 (239993923-239993452)
	319-790, gnl\|Mm7\|chr1 (176990997-176990547)