Ss1.1-Ova1-OVRM10043H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGTGGCCGAAGCAGGGGGACAGCAAGGGACGCTTAGGCGAGGACCATGGCGGACGGCGG CTCGGAGCGGGCTGATGGGCGCATCGTGAAGATGGAGGTGGACTACAGCGCCACAGTGGA TCAGCGGCTGCCCGAGTGCGAGAAGCTGGCCAAGGAAGGAAGACTTCAAGAAGTCATTGA AACCCTTCTGTCTTTGGAAAAACAGACCCGAACTGCTTCTGATATGGTGTCTACGTCCCG TATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGGGATTTACTTAATGA AAATATTATGCTTTTATCAAAAAGACGGAGTCAGTTAAAACAAGCTGTTGCAAAAATGGT TCAACAGTGCTGTACATACGTTGAGGAAATCACAGACCTTCCAGTCAAACTTCGATTAAT TGATACTCTGCGAATGGTAACAGAAGGAAAAATTTATGTTGAAATTGAGCGTGCTCGGCT GACGAAAACATTAGCAACTATAAAAGAACAGAACGGCGACGTCAAAGAGGCAGCCTCCAT TTTACAGGAGTTACAGGTGGAAACCTATGGGTCAATGGAAAAGAAAGAGCGAGTGGAGTT TATTTTGGAGCAGATGCGGCTGTGCCTAGCTGTGAAGGATTATATTCGCACACAAATCAT CAGCAAGAAAATTAACACCAAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGTGGCCGAAGCAGGGGGACAGCAAGGGACGCTTAGGCGAGGACCATGGCGGACGGCGG CTCGGAGCGGGCTGATGGGCGCATCGTGAAGATGGAGGTGGACTACAGCGCCACAGTGGA TCAGCGGCTGCCCGAGTGCGAGAAGCTGGCCAAGGAAGGAAGACTTCAAGAAGTCATTGA AACCCTTCTGTCTTTGGAAAAACAGACCCGAACTGCTTCTGATATGGTGTCTACGTCCCG TATCTTAGTTGCAGTAGTGAAGATGTGCTATGAGGCTAAAGAATGGGATTTACTTAATGA AAATATTATGCTTTTATCAAAAAGACGGAGTCAGTTAAAACAAGCTGTTGCAAAAATGGT TCAACAGTGCTGTACATACGTTGAGGAAATCACAGACCTTCCAGTCAAACTTCGATTAAT TGATACTCTGCGAATGGTAACAGAAGGAAAAATTTATGTTGAAATTGAGCGTGCTCGGCT GACGAAAACATTAGCAACTATAAAAGAACAGAACGGCGACGTCAAAGAGGCAGCCTCCAT TTTACAGGAGTTACAGGTGGAAACCTATGGGTCAATGGAAAAGAAAGAGCGAGTGGAGTT TATTTTGGAGCAGATGCGGCTGTGCCTAGCTGTGAAGGATTATATTCGCACACAAATCAT CAGCAAGAAAATTAACACCAAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chr19 (43545082-43545236) | |
| 1-155, gnl|canFam2|chr9 (16264479-16264345) | |
| 1-155, gnl|canFam2|chr9 (16264459-16264354) | |
| 1-155, gnl|danRer3|chrUn (16451988-16452125) | |
| 1-155, gnl|danRer3|chrUn (16451624-16451701) | |
| 1-155, gnl|echTel1|scaffold_230482 (8687-8619) | |
| 1-155, gnl|echTel1|scaffold_284100 (4141-4007) | |
| 1-155, gnl|fr1|chrUn (277478750-277478883) | |
| 1-155, gnl|fr1|chrUn (277478786-277478883) | |
| 1-155, gnl|galGal2|chrUn (46016349-46016486) | |
| 1-155, gnl|hg17|chr17 (62792973-62793107) | |
| 1-155, gnl|Hg17|chr17 (62793143-62792989) | |
| 1-155, gnl|hg17|chr3 (73009839-73009944) | |
| 1-155, gnl|loxAfr1|scaffold_172011 (1675-1541) | |
| 1-155, gnl|loxAfr1|scaffold_172011 (1655-1550) | |
| 1-155, gnl|mm7|chr11 (107588744-107588610) | |
| 1-155, gnl|mm7|chr11 (107588724-107588619) | |
| 1-155, gnl|Mm7|chr11 (107588572-107588726) | |
| 1-155, gnl|monDom2|scaffold_18 (18167506-18167372) | |
| 1-155, gnl|monDom2|scaffold_18 (18167477-18167381) | |
| 1-155, gnl|panTro1|chr19 (66071159-66071293) | |
| 1-155, gnl|panTro1|chr2 (74980022-74980127) | |
| 1-155, gnl|rheMac2|chr16 (62706827-62706961) | |
| 1-155, gnl|rheMac2|chr16 (62706847-62706952) | |
| 1-155, gnl|rn3|chr10 (96895925-96895791) | |
| 1-155, gnl|rn3|chr5 (13880223-13880119) | |
| 1-155, gnl|tetNig1|chrUn_random (51301884-51302017) | |
| 1-155, gnl|tetNig1|chrUn_random (51301912-51302017) | |
| 215-360, gnl|bosTau2|chr19 (43553519-43553664) | |
| 215-360, gnl|canFam2|chr9 (16274971-16274843) | |
| 215-360, gnl|danRer3|chrUn (16451436-16451558) | |
| 215-360, gnl|dasNov1|scaffold_37300 (15745-15851) | |
| 215-360, gnl|echTel1|scaffold_230482 (8877-8750) | |
| 215-360, gnl|fr1|chrUn (277478002-277478130) | |
| 215-360, gnl|galGal2|chr18 (6931116-6930988) | |
| 215-360, gnl|Hg17|chr17 (62784009-62783857) | |
| 215-360, gnl|hg17|chr3 (73009647-73009775) | |
| 215-360, gnl|loxAfr1|scaffold_20129 (28086-28214) | |
| 215-360, gnl|mm7|chr11 (107594878-107594751) | |
| 215-360, gnl|Mm7|chr11 (107594749-107594894) | |
| 215-360, gnl|monDom2|scaffold_18 (18177445-18177317) | |
| 215-360, gnl|oryCun1|scaffold_190048 (9661-9788) | |
| 215-360, gnl|panTro1|chr2 (74979830-74979958) | |
| 215-360, gnl|rheMac2|chr16 (62697787-62697914) | |
| 215-360, gnl|rn3|chr5 (13880414-13880287) | |
| 215-360, gnl|tetNig1|chrUn_random (51301133-51301261) | |
| 215-360, gnl|xenTro1|scaffold_857 (5723-5851) | |
| 555-684, gnl|bosTau2|chr19 (43559785-43559914) | |
| 555-684, gnl|canFam2|chr9 (16289820-16289667) | |
| 555-684, gnl|canFam2|chr9 (16289818-16289673) | |
| 555-684, gnl|danRer3|chrUn (16447947-16448099) | |
| 555-684, gnl|danRer3|chrUn (16447949-16448098) | |
| 555-684, gnl|dasNov1|scaffold_37300 (15388-15535) | |
| 555-684, gnl|dasNov1|scaffold_37300 (15390-15539) | |
| 555-684, gnl|echTel1|scaffold_12828 (266-119) | |
| 555-684, gnl|echTel1|scaffold_310474 (3578-3730) | |
| 555-684, gnl|fr1|chrUn (277477238-277477390) | |
| 555-684, gnl|fr1|chrUn (277477247-277477389) | |
| 555-684, gnl|galGal2|chr18 (6933901-6933749) | |
| 555-684, gnl|galGal2|chr18 (6933899-6933751) | |
| 555-684, gnl|hg17|chr17 (62773915-62774067) | |
| 555-684, gnl|Hg17|chr17 (62774065-62773936) | |
| 555-684, gnl|hg17|chr3 (73009288-73009437) | |
| 555-684, gnl|loxAfr1|scaffold_20129 (20922-21074) | |
| 555-684, gnl|loxAfr1|scaffold_20129 (20924-21069) | |
| 555-684, gnl|mm7|chr11 (107600972-107600820) | |
| 555-684, gnl|mm7|chr11 (107600970-107600821) | |
| 555-684, gnl|Mm7|chr11 (107600820-107600949) | |
| 555-684, gnl|monDom2|scaffold_18 (18196524-18196372) | |
| 555-684, gnl|monDom2|scaffold_18 (18196522-18196374) | |
| 555-684, gnl|oryCun1|scaffold_101456 (3489-3641) | |
| 555-684, gnl|oryCun1|scaffold_101456 (3491-3640) | |
| 555-684, gnl|panTro1|chr19 (66052266-66052418) | |
| 555-684, gnl|panTro1|chr2 (74979471-74979620) | |
| 555-684, gnl|rheMac2|chr16 (62690164-62690316) | |
| 555-684, gnl|rheMac2|chr16 (62690159-62690311) | |
| 555-684, gnl|rn3|chr10 (96908330-96908178) | |
| 555-684, gnl|rn3|chr5 (13880771-13880625) | |
| 555-684, gnl|tetNig1|chrUn_random (51300337-51300489) | |
| 555-684, gnl|tetNig1|chrUn_random (51300346-51300488) | |
| 555-684, gnl|xenTro1|scaffold_857 (3675-3827) | |
| 555-684, gnl|xenTro1|scaffold_857 (3677-3826) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chr19 (43545082-43545236) | |
| 1-155, gnl|canFam2|chr9 (16264479-16264345) | |
| 1-155, gnl|canFam2|chr9 (16264459-16264354) | |
| 1-155, gnl|danRer3|chrUn (16451988-16452125) | |
| 1-155, gnl|danRer3|chrUn (16451624-16451701) | |
| 1-155, gnl|echTel1|scaffold_230482 (8687-8619) | |
| 1-155, gnl|echTel1|scaffold_284100 (4141-4007) | |
| 1-155, gnl|fr1|chrUn (277478750-277478883) | |
| 1-155, gnl|fr1|chrUn (277478786-277478883) | |
| 1-155, gnl|galGal2|chrUn (46016349-46016486) | |
| 1-155, gnl|hg17|chr17 (62792973-62793107) | |
| 1-155, gnl|Hg17|chr17 (62793143-62792989) | |
| 1-155, gnl|hg17|chr3 (73009839-73009944) | |
| 1-155, gnl|loxAfr1|scaffold_172011 (1675-1541) | |
| 1-155, gnl|loxAfr1|scaffold_172011 (1655-1550) | |
| 1-155, gnl|mm7|chr11 (107588744-107588610) | |
| 1-155, gnl|mm7|chr11 (107588724-107588619) | |
| 1-155, gnl|Mm7|chr11 (107588572-107588726) | |
| 1-155, gnl|monDom2|scaffold_18 (18167506-18167372) | |
| 1-155, gnl|monDom2|scaffold_18 (18167477-18167381) | |
| 1-155, gnl|panTro1|chr19 (66071159-66071293) | |
| 1-155, gnl|panTro1|chr2 (74980022-74980127) | |
| 1-155, gnl|rheMac2|chr16 (62706827-62706961) | |
| 1-155, gnl|rheMac2|chr16 (62706847-62706952) | |
| 1-155, gnl|rn3|chr10 (96895925-96895791) | |
| 1-155, gnl|rn3|chr5 (13880223-13880119) | |
| 1-155, gnl|tetNig1|chrUn_random (51301884-51302017) | |
| 1-155, gnl|tetNig1|chrUn_random (51301912-51302017) | |
| 215-360, gnl|bosTau2|chr19 (43553519-43553664) | |
| 215-360, gnl|canFam2|chr9 (16274971-16274843) | |
| 215-360, gnl|danRer3|chrUn (16451436-16451558) | |
| 215-360, gnl|dasNov1|scaffold_37300 (15745-15851) | |
| 215-360, gnl|echTel1|scaffold_230482 (8877-8750) | |
| 215-360, gnl|fr1|chrUn (277478002-277478130) | |
| 215-360, gnl|galGal2|chr18 (6931116-6930988) | |
| 215-360, gnl|Hg17|chr17 (62784009-62783857) | |
| 215-360, gnl|hg17|chr3 (73009647-73009775) | |
| 215-360, gnl|loxAfr1|scaffold_20129 (28086-28214) | |
| 215-360, gnl|mm7|chr11 (107594878-107594751) | |
| 215-360, gnl|Mm7|chr11 (107594749-107594894) | |
| 215-360, gnl|monDom2|scaffold_18 (18177445-18177317) | |
| 215-360, gnl|oryCun1|scaffold_190048 (9661-9788) | |
| 215-360, gnl|panTro1|chr2 (74979830-74979958) | |
| 215-360, gnl|rheMac2|chr16 (62697787-62697914) | |
| 215-360, gnl|rn3|chr5 (13880414-13880287) | |
| 215-360, gnl|tetNig1|chrUn_random (51301133-51301261) | |
| 215-360, gnl|xenTro1|scaffold_857 (5723-5851) | |
| 555-684, gnl|bosTau2|chr19 (43559785-43559914) | |
| 555-684, gnl|canFam2|chr9 (16289820-16289667) | |
| 555-684, gnl|canFam2|chr9 (16289818-16289673) | |
| 555-684, gnl|danRer3|chrUn (16447947-16448099) | |
| 555-684, gnl|danRer3|chrUn (16447949-16448098) | |
| 555-684, gnl|dasNov1|scaffold_37300 (15388-15535) | |
| 555-684, gnl|dasNov1|scaffold_37300 (15390-15539) | |
| 555-684, gnl|echTel1|scaffold_12828 (266-119) | |
| 555-684, gnl|echTel1|scaffold_310474 (3578-3730) | |
| 555-684, gnl|fr1|chrUn (277477238-277477390) | |
| 555-684, gnl|fr1|chrUn (277477247-277477389) | |
| 555-684, gnl|galGal2|chr18 (6933901-6933749) | |
| 555-684, gnl|galGal2|chr18 (6933899-6933751) | |
| 555-684, gnl|hg17|chr17 (62773915-62774067) | |
| 555-684, gnl|Hg17|chr17 (62774065-62773936) | |
| 555-684, gnl|hg17|chr3 (73009288-73009437) | |
| 555-684, gnl|loxAfr1|scaffold_20129 (20922-21074) | |
| 555-684, gnl|loxAfr1|scaffold_20129 (20924-21069) | |
| 555-684, gnl|mm7|chr11 (107600972-107600820) | |
| 555-684, gnl|mm7|chr11 (107600970-107600821) | |
| 555-684, gnl|Mm7|chr11 (107600820-107600949) | |
| 555-684, gnl|monDom2|scaffold_18 (18196524-18196372) | |
| 555-684, gnl|monDom2|scaffold_18 (18196522-18196374) | |
| 555-684, gnl|oryCun1|scaffold_101456 (3489-3641) | |
| 555-684, gnl|oryCun1|scaffold_101456 (3491-3640) | |
| 555-684, gnl|panTro1|chr19 (66052266-66052418) | |
| 555-684, gnl|panTro1|chr2 (74979471-74979620) | |
| 555-684, gnl|rheMac2|chr16 (62690164-62690316) | |
| 555-684, gnl|rheMac2|chr16 (62690159-62690311) | |
| 555-684, gnl|rn3|chr10 (96908330-96908178) | |
| 555-684, gnl|rn3|chr5 (13880771-13880625) | |
| 555-684, gnl|tetNig1|chrUn_random (51300337-51300489) | |
| 555-684, gnl|tetNig1|chrUn_random (51300346-51300488) | |
| 555-684, gnl|xenTro1|scaffold_857 (3675-3827) | |
| 555-684, gnl|xenTro1|scaffold_857 (3677-3826) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cut (0.169924) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ldo (0.0970026) |