Non-Coding RNA Search

Ss1.1-Ova1-OVRM10044F01.5

Sequence:


               
               AAGTGAAATATGCTCTTTTAGGTTCTTCAGTCTACTGCCATCTGGACAGAACAAAAAGTG
GTAGTTTGGATATAGGGAAATAGTACAGACCCCTCATCTTTAACCCAGAATTGCTTGAGA
AAATTGAAGTGTGTTTTCTCTTACAGGATTCTGCTATGTAGAGTTTGATGAAGTGGATTC
CCTTAAGGAAGCCTTGACATACGATGGTGCAGTAAGTACACTCAGGCTTTCTCTGTGGTA
TTAGCAGGTGAGTTTTTTCCTTGCCAATACTGAACAGTATTTTCTCCTTATCATTAGCTC
TTGGGTGACCGGTCACTTCGTGTGGACATTGCAGAAGGCAGAAAACAAGACAAAGGCGGC
TTTGGATTCAGGAAAGGTGGACCAGATGACAGAGGTGATTGGTTCTTCTCCAGCTGAATG
TAAAACTTGCTGTCTGCCCCCTGATGACAGCCCTGGAAGGTTACCAGTAGAACTCTGTCA
TGGGTCTGATAGGTGCTCATGAGCTTTTAAAAACCTGTGAAGTCTTAGAATGAATGATGC
TTCTGCAAGCCTGGGTTTTTTGGTTTTTGGCTTTTGGTTTTGTTTTTGTTTTTTTCTTTC
TTCCCATTGGCAACAAAAACTCTTCTAATTTCATTGAACTTCCCATCACATGAGTTGTAC
ATCTTCCCAGTGAATTTTTCCATGTTCGTGCAGCAAGGTAATGGTACGACCTCAACTTTA
TCTTTTTTGTGTATCCTCAGGAATGGGTGGCTCTCGAGAATCTAGAGGTGGATGGGATTC
CCGGGATGACTTCAATTCCGGTATCAGTATTTAAAGTATCACCACTTACCTTTTTCAGTG
GCCTTGCTGCTCTTGTACATTTCTTGTGAGTAGCCCGCCTGGCCAGACTACTTCCTTAGT
TCCTTTCACAAATGAAACTTTCCTAAAAGGTACCCAGGCATGCAATAAGCCTCTGTTAGA
ACCTAAATGTTTGGGGCACGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGAAATATGCTCTTTTAGGTTCTTCAGTCTACTGCCATCTGGACAGAACAAAAAGTG
GTAGTTTGGATATAGGGAAATAGTACAGACCCCTCATCTTTAACCCAGAATTGCTTGAGA
AAATTGAAGTGTGTTTTCTCTTACAGGATTCTGCTATGTAGAGTTTGATGAAGTGGATTC
CCTTAAGGAAGCCTTGACATACGATGGTGCAGTAAGTACACTCAGGCTTTCTCTGTGGTA
TTAGCAGGTGAGTTTTTTCCTTGCCAATACTGAACAGTATTTTCTCCTTATCATTAGCTC
TTGGGTGACCGGTCACTTCGTGTGGACATTGCAGAAGGCAGAAAACAAGACAAAGGCGGC
TTTGGATTCAGGAAAGGTGGACCAGATGACAGAGGTGATTGGTTCTTCTCCAGCTGAATG
TAAAACTTGCTGTCTGCCCCCTGATGACAGCCCTGGAAGGTTACCAGTAGAACTCTGTCA
TGGGTCTGATAGGTGCTCATGAGCTTTTAAAAACCTGTGAAGTCTTAGAATGAATGATGC
TTCTGCAAGCCTGGGTTTTTTGGTTTTTGGCTTTTGGTTTTGTTTTTGTTTTTTTCTTTC
TTCCCATTGGCAACAAAAACTCTTCTAATTTCATTGAACTTCCCATCACATGAGTTGTAC
ATCTTCCCAGTGAATTTTTCCATGTTCGTGCAGCAAGGTAATGGTACGACCTCAACTTTA
TCTTTTTTGTGTATCCTCAGGAATGGGTGGCTCTCGAGAATCTAGAGGTGGATGGGATTC
CCGGGATGACTTCAATTCCGGTATCAGTATTTAAAGTATCACCACTTACCTTTTTCAGTG
GCCTTGCTGCTCTTGTACATTTCTTGTGAGTAGCCCGCCTGGCCAGACTACTTCCTTAGT
TCCTTTCACAAATGAAACTTTCCTAAAAGGTACCCAGGCATGCAATAAGCCTCTGTTAGA
ACCTAAATGTTTGGGGCACGGCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               111-229, + strand, RNAz p=0.552331
               

               
               825-984, - strand, RNAz p=0.89935

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-229, + strand, RNAz p=0.552331
               

               
               825-984, - strand, RNAz p=0.89935

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-577, gnl|bosTau2|chr25 (29894089-29894672)
               

               
               1-577, gnl|Hg17|chr7 (73048521-73049094)
               


               
               588-984, gnl|bosTau2|chr25 (29894651-29895029)
               

               
               588-984, gnl|Hg17|chr7 (73049075-73049468)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-577, gnl|bosTau2|chr25 (29894089-29894672)
               

               
               1-577, gnl|Hg17|chr7 (73048521-73049094)
               


               
               588-984, gnl|bosTau2|chr25 (29894651-29895029)
               

               
               588-984, gnl|Hg17|chr7 (73049075-73049468)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	111-229, + strand, RNAz p=0.552331
	825-984, - strand, RNAz p=0.89935

	1-577, gnl\|bosTau2\|chr25 (29894089-29894672)
	1-577, gnl\|Hg17\|chr7 (73048521-73049094)

	588-984, gnl\|bosTau2\|chr25 (29894651-29895029)
	588-984, gnl\|Hg17\|chr7 (73049075-73049468)