Non-Coding RNA Search

Ss1.1-Ova1-OVRM10046C01.5

Sequence:


               
               ATTATTTTGGTCAAATATTTCTGGGAAAATGAGATTGCATCTTTACAATTGGATGTTACT
TGAAGAAGGAATAATGCTTTGTGACCACTTTGATATGCCGTTATCTCCTTCTTTCCACTT
GCCACACAAGATTTTAGAAGAAGGAAAGCAATCCTCCATAGATCTTTGTTTTCAGGAAGG
AAGGGTCCAAACCAAGAAATCACTTGCTTTTATTCCAGAAGTTAAATGGGAGGGTCTTAA
GATTTGAATGTTTGTTCTGCTTTGAATTGTATAGCTTTTGAGATGTATTATATGCCTAAC
TTTATGATCACTATAAATTTAATGACGCCAGGAACATGCATAATATTGAACTATTTCACG
TACCGTTTTAATAGAAACCTCAGGGCCCAAGTAACAGTGATAGAAATTAGAAAAACCTCT
AGTTAGAACTGCCCACCTAATCAAAGCCCAAGAGATAATTTTCAGTGCAAAATCAATATA
TAACTTAGTGCTAGTTAGCTCCACAGACTCTAGTAGATAATTTTATCATCATAAATAATG
CCTGGGGAGAACATAAAATCACACAGGAAAACATTGCCCTCAGCACATTCAGTAGCTGCA
TTGTGGGTACTCCTGAGAGTATTGTTAATAAAGACTTAATTCTTAAATACAGGCACTTCC
CAGCTTTCAAATAGGTTATGCTCTTCTAAAAGTGCATTGGGAAGTTAATTTTTTTTTTTT
TTTTAAACAGCTCAGTGTTGTAAATGGTGTTTAGATGCTAGACAAGGCCACAAATATTAG
TCCATAATGTATCTTGAATACTCTGGTGGAAGGTATTTATAAAGTCCTTATGTGGTCTTT
ACTGAAACTATGAGCAAGATGGAAACAATTTGTAAAATGATTTTAAGGCAAATTTGGTTT
TTACTCCTGCTATGTTAGGATTTGATTCTATTAACTATCAAACCCAATTTCTTTTTTAAC
TCTATAGCCAGTTTATGTCTGCATCTAAAATAAGAATGTGGAGTTCCCGTCGTGGCACAG
TGGTTAACGAATCCAACTAGGAACCATGAGGTTGCGGGTTTGATCCCTGGCCTTGCTCAG
TGGGTTAAGGACCCGGTGTTGCCTTGAGCTGTGGTGTAGGTTGCAGACGCGGCTCGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATTTTGGTCAAATATTTCTGGGAAAATGAGATTGCATCTTTACAATTGGATGTTACT
TGAAGAAGGAATAATGCTTTGTGACCACTTTGATATGCCGTTATCTCCTTCTTTCCACTT
GCCACACAAGATTTTAGAAGAAGGAAAGCAATCCTCCATAGATCTTTGTTTTCAGGAAGG
AAGGGTCCAAACCAAGAAATCACTTGCTTTTATTCCAGAAGTTAAATGGGAGGGTCTTAA
GATTTGAATGTTTGTTCTGCTTTGAATTGTATAGCTTTTGAGATGTATTATATGCCTAAC
TTTATGATCACTATAAATTTAATGACGCCAGGAACATGCATAATATTGAACTATTTCACG
TACCGTTTTAATAGAAACCTCAGGGCCCAAGTAACAGTGATAGAAATTAGAAAAACCTCT
AGTTAGAACTGCCCACCTAATCAAAGCCCAAGAGATAATTTTCAGTGCAAAATCAATATA
TAACTTAGTGCTAGTTAGCTCCACAGACTCTAGTAGATAATTTTATCATCATAAATAATG
CCTGGGGAGAACATAAAATCACACAGGAAAACATTGCCCTCAGCACATTCAGTAGCTGCA
TTGTGGGTACTCCTGAGAGTATTGTTAATAAAGACTTAATTCTTAAATACAGGCACTTCC
CAGCTTTCAAATAGGTTATGCTCTTCTAAAAGTGCATTGGGAAGTTAATTTTTTTTTTTT
TTTTAAACAGCTCAGTGTTGTAAATGGTGTTTAGATGCTAGACAAGGCCACAAATATTAG
TCCATAATGTATCTTGAATACTCTGGTGGAAGGTATTTATAAAGTCCTTATGTGGTCTTT
ACTGAAACTATGAGCAAGATGGAAACAATTTGTAAAATGATTTTAAGGCAAATTTGGTTT
TTACTCCTGCTATGTTAGGATTTGATTCTATTAACTATCAAACCCAATTTCTTTTTTAAC
TCTATAGCCAGTTTATGTCTGCATCTAAAATAAGAATGTGGAGTTCCCGTCGTGGCACAG
TGGTTAACGAATCCAACTAGGAACCATGAGGTTGCGGGTTTGATCCCTGGCCTTGCTCAG
TGGGTTAAGGACCCGGTGTTGCCTTGAGCTGTGGTGTAGGTTGCAGACGCGGCTCGGATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-996, gnl|bosTau2|chr9 (34193242-34194227)
               

               
               3-996, gnl|Hg17|chr6 (90095567-90094575)
               

               
               3-996, gnl|Mm7|chr4 (33328875-33329815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-996, gnl|bosTau2|chr9 (34193242-34194227)
               

               
               3-996, gnl|Hg17|chr6 (90095567-90094575)
               

               
               3-996, gnl|Mm7|chr4 (33328875-33329815)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	3-996, gnl\|bosTau2\|chr9 (34193242-34194227)
	3-996, gnl\|Hg17\|chr6 (90095567-90094575)
	3-996, gnl\|Mm7\|chr4 (33328875-33329815)