Non-Coding RNA Search

Ss1.1-Ova1-OVRM10049D10.5

Sequence:


               
               GCTTTAACTATGGCGAGCTTTGGGGTCGGGGCTGAACAGGAGCCCCTCTTAGGAGACCAT
ACACCAGGAAGCAGAGGGGATATTATAGAAACTGAGGAGCATTATAAGAGCCGATGGAGA
TCTATTAGGATTAAACTGAGGAGCATTATAAGAGCCGATGGAGATCTATTAGGATTCTGT
ATTTTACTATGTTTCTCAGCAGTGTAGATTGATCAGACAGCCGATGCAAGTTTTTTGGGC
TGGGTTATTGCTACATTTAGCCTTGGCCAAATGGCAGCTTCACCTTTATTTGGTTTGTGG
TCTAATTATAGACCAAGAAAAGAACCTCTCATCGTTTCCATTTTCATTTCGGTGGCAGCC
AACTGCCTCTATGCCTATGTCCACCTACCACCTTCTCATAATAAATACTACATGTTGGTT
GCTCGTGGATTAGTGGGATTTGGAGCAGGAAATGTAGCTGTTATTAGATCATATATTGCT
GGTGCTACCTCTCTTCAAGAAAGAACAAGTGCCATGGCAAACACAAGTGCATGCCAAGCA
TTAGGTTTTATCCTAGGTCCAGTTTTTCAGACTTGTTTTGCACTCATTGGAGAAAAGGGT
GTGACATGGGATACCATTAAGCTGCAGATAAACATGTATACAGCACCTGTTTTACTTAGT
GTCTTCCTGGGAATATTAAATATTATTCTGATCCTTACTATATTAAGAGAACATCGTGTG
GATGACTCAGGACGACAGTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTAACTATGGCGAGCTTTGGGGTCGGGGCTGAACAGGAGCCCCTCTTAGGAGACCAT
ACACCAGGAAGCAGAGGGGATATTATAGAAACTGAGGAGCATTATAAGAGCCGATGGAGA
TCTATTAGGATTAAACTGAGGAGCATTATAAGAGCCGATGGAGATCTATTAGGATTCTGT
ATTTTACTATGTTTCTCAGCAGTGTAGATTGATCAGACAGCCGATGCAAGTTTTTTGGGC
TGGGTTATTGCTACATTTAGCCTTGGCCAAATGGCAGCTTCACCTTTATTTGGTTTGTGG
TCTAATTATAGACCAAGAAAAGAACCTCTCATCGTTTCCATTTTCATTTCGGTGGCAGCC
AACTGCCTCTATGCCTATGTCCACCTACCACCTTCTCATAATAAATACTACATGTTGGTT
GCTCGTGGATTAGTGGGATTTGGAGCAGGAAATGTAGCTGTTATTAGATCATATATTGCT
GGTGCTACCTCTCTTCAAGAAAGAACAAGTGCCATGGCAAACACAAGTGCATGCCAAGCA
TTAGGTTTTATCCTAGGTCCAGTTTTTCAGACTTGTTTTGCACTCATTGGAGAAAAGGGT
GTGACATGGGATACCATTAAGCTGCAGATAAACATGTATACAGCACCTGTTTTACTTAGT
GTCTTCCTGGGAATATTAAATATTATTCTGATCCTTACTATATTAAGAGAACATCGTGTG
GATGACTCAGGACGACAGTGTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61884351|ref|XP_594055.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61884351|ref|XP_594055.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               206-405, + strand, RNAz p=0.810894

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-405, + strand, RNAz p=0.810894

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               206-453, gnl|bosTau2|chr17 (18638274-18638027)
               

               
               206-453, gnl|Hg17|chr4 (129222754-129222507)
               

               
               206-453, gnl|Mm7|chr3 (40602063-40601815)
               


               
               561-707, gnl|bosTau2|chr17 (18634865-18634719)
               

               
               561-707, gnl|Hg17|chr4 (129218759-129218613)
               

               
               561-707, gnl|Mm7|chr3 (40598810-40598664)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-453, gnl|bosTau2|chr17 (18638274-18638027)
               

               
               206-453, gnl|Hg17|chr4 (129222754-129222507)
               

               
               206-453, gnl|Mm7|chr3 (40602063-40601815)
               


               
               561-707, gnl|bosTau2|chr17 (18634865-18634719)
               

               
               561-707, gnl|Hg17|chr4 (129218759-129218613)
               

               
               561-707, gnl|Mm7|chr3 (40598810-40598664)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	206-453, gnl\|bosTau2\|chr17 (18638274-18638027)
	206-453, gnl\|Hg17\|chr4 (129222754-129222507)
	206-453, gnl\|Mm7\|chr3 (40602063-40601815)

	561-707, gnl\|bosTau2\|chr17 (18634865-18634719)
	561-707, gnl\|Hg17\|chr4 (129218759-129218613)
	561-707, gnl\|Mm7\|chr3 (40598810-40598664)