Non-Coding RNA Search

Ss1.1-Ova1-OVRM10050A10.5

Sequence:


               
               CGAGCACCGCCGTGGCCGACTCGCGGTCCTTCCGCGTACTGACGCCCCCGAGGACGCCAG
CGCGCAGGTGCCGACGCCAGCCTTAAAAAAAATCTTGGCCAGACCCCACGCCGAACCGCC
CAGCCCCCTCTGATCCCACCGCGGCCGGGCCTGGAACCCAGCCCCAGCCACCAGAGCCTG
GGCCCATGTCCCCGCTCTCCTGGCCATGCACGGGAAGCTGCTGGTGCTTGCCAGCCTCTA
CCTGGTGCAGGGCCTGCCCTATGGGCTGCAGTCTGGCCTTCTGCCGGTGCTGCTGCGGGC
TCGCGGTCTGTCCCTGACACACGTGGGACTGGCCAAAGTGCTGTATGCACCGTGGTTGTT
CAAGCTCGTGTGGGCCCCGCTGGTGGACGCTCGGGGCTCTCCGAGGGCCTGGCTGACGCT
CAGCACAGCAGCTCTTGGCCTCTTGTGTGGGTTGCTGGCAGCTCTGCCTCCTGCTGAAGC
TGGCCAGTCTGGGCTGCCTCTTACTGTGGCAGGGCTACTTCTGCTACTGAACTTGGCTGC
AGCTGTACAGGATGTGGCCTTGGACACACTGGCGATGCAGCTCCTGGAGCCGGCAGAGCT
GGGGCCGGGCAACACGGTGCAGGTGGTGGCTTACAAGCTGGGGGCGGTGCTGGCTGGGGG
TGGACTGCTGACCCTCTTGCCCACCCTCTCCTGGCCCCTGCTCTTTCTGCTCCTGGCTGC
CACCTATTGGCTGGCTGCTGCCCTGGCTTGGGCTGCACCGGCCCTGCAACAGCTTCCTGC
GCCTCAGCCATCAGAACCCCGCCGACACACGCTGCACCTTCAGCAGCACTTGCTGGCCGT
GCCTGGGACCCTGTGGATGGCAGGTTTTGTGCTCTCCTACAAGCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCACCGCCGTGGCCGACTCGCGGTCCTTCCGCGTACTGACGCCCCCGAGGACGCCAG
CGCGCAGGTGCCGACGCCAGCCTTAAAAAAAATCTTGGCCAGACCCCACGCCGAACCGCC
CAGCCCCCTCTGATCCCACCGCGGCCGGGCCTGGAACCCAGCCCCAGCCACCAGAGCCTG
GGCCCATGTCCCCGCTCTCCTGGCCATGCACGGGAAGCTGCTGGTGCTTGCCAGCCTCTA
CCTGGTGCAGGGCCTGCCCTATGGGCTGCAGTCTGGCCTTCTGCCGGTGCTGCTGCGGGC
TCGCGGTCTGTCCCTGACACACGTGGGACTGGCCAAAGTGCTGTATGCACCGTGGTTGTT
CAAGCTCGTGTGGGCCCCGCTGGTGGACGCTCGGGGCTCTCCGAGGGCCTGGCTGACGCT
CAGCACAGCAGCTCTTGGCCTCTTGTGTGGGTTGCTGGCAGCTCTGCCTCCTGCTGAAGC
TGGCCAGTCTGGGCTGCCTCTTACTGTGGCAGGGCTACTTCTGCTACTGAACTTGGCTGC
AGCTGTACAGGATGTGGCCTTGGACACACTGGCGATGCAGCTCCTGGAGCCGGCAGAGCT
GGGGCCGGGCAACACGGTGCAGGTGGTGGCTTACAAGCTGGGGGCGGTGCTGGCTGGGGG
TGGACTGCTGACCCTCTTGCCCACCCTCTCCTGGCCCCTGCTCTTTCTGCTCCTGGCTGC
CACCTATTGGCTGGCTGCTGCCCTGGCTTGGGCTGCACCGGCCCTGCAACAGCTTCCTGC
GCCTCAGCCATCAGAACCCCGCCGACACACGCTGCACCTTCAGCAGCACTTGCTGGCCGT
GCCTGGGACCCTGTGGATGGCAGGTTTTGTGCTCTCCTACAAGCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U419_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U419_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               679-838, - strand, RNAz p=0.987024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               679-838, - strand, RNAz p=0.987024

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               628-732, + strand, RNAmicro p=0.999975
               

               
               707-828, - strand, RNAmicro p=0.982777

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               628-732, + strand, RNAmicro p=0.999975
               

               
               707-828, - strand, RNAmicro p=0.982777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               127-888, gnl|bosTau2|chr14 (3256228-3255476)
               

               
               127-888, gnl|Hg17|chr8 (145705439-145706207)
               

               
               127-888, gnl|Mm7|chr15 (76784217-76784903)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-888, gnl|bosTau2|chr14 (3256228-3255476)
               

               
               127-888, gnl|Hg17|chr8 (145705439-145706207)
               

               
               127-888, gnl|Mm7|chr15 (76784217-76784903)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	628-732, + strand, RNAmicro p=0.999975
	707-828, - strand, RNAmicro p=0.982777

	127-888, gnl\|bosTau2\|chr14 (3256228-3255476)
	127-888, gnl\|Hg17\|chr8 (145705439-145706207)
	127-888, gnl\|Mm7\|chr15 (76784217-76784903)