Non-Coding RNA Search

Ss1.1-Ova1-OVRM10052C08.5

Sequence:


               
               GTTGGCCACTGGATTGTCTCTGCTTTTACACAGGTTCGGGCGGCGGGGAAGGCGGGCGGG
TGCGGGGCCGCCCCAGCTCCGGCTTCCTAGAGGCGGCCTCTCTTCCTTTGGGTGTGCATG
CCTTTGGCTGCTTTGATTCGGCTTTAGGAGCTAATTCCCCGGTGGAGTAGCCCCCGGCGA
GTCCGACCCCTCCCTTCGGGCCCCCTCCCAGCCCGCGGCCCGCCGCCTGGGCTCTGCGTG
TGGGAATGATGTGCGCATTGGAGGGTCTAAGTTCTTCATGTGCCTGGGGGGTCCTCCCTT
TTTTTTTCTTAGGCAACCAAATCTACTAATTTTACTAATCAGTAAATCCCAGGCAGCGGC
TGGAGAGACAAACGCTGTTTTCCCGCTTGATTCCCAGAACCTCTTCGCTTTTTATTTTTA
AAGAGGGAGACGATGAACTGAGCAGATCCACACCATGGAGCCTCGGATCTTACTGAGAAC
ATTCTGTTTGATCTTCGGTCTCGGAGCAGTTTGGGGGCTGGGTGTGGACCCCTCCCTACA
GATTGACGTCCTAACGGAGTTAGAACTTGGGGAGTCCACGACCGGAGTGCGCCAGGTCCC
CGGGCTGCATAATGGGACGAAAGCCTTTCTCTTTCAAGATACTCCCAGAAGTATAAAAGC
ATCCACTGCTACAGCTGAACAGTTTTTTCAGAAGCTGAGAAATAAACATGAATTTACTGT
TTTGGTGACCCTGAAACAGACCCACTTAAATTCTGGTGTGATTCTCTCCATCCACCACTT
GGATCACAGGTACCTGGAACTGGAAAGCAGTGGTCATCGGAATGAGGTCAGACTGCACTA
CCGCTCAGGTAGCCACCACCCTCACACAGAAGTGTTTCCTTACATTTTAGCTGATGATAA
ATGGCACAAACTCTCCTTAGCCATCAGCGCCTCCCACTTGATTTTACACATTGACTGCAA
TAAAATATATGAAAGAGTGGTGGAAAAGCCCTCCACAGACTTGCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCCACTGGATTGTCTCTGCTTTTACACAGGTTCGGGCGGCGGGGAAGGCGGGCGGG
TGCGGGGCCGCCCCAGCTCCGGCTTCCTAGAGGCGGCCTCTCTTCCTTTGGGTGTGCATG
CCTTTGGCTGCTTTGATTCGGCTTTAGGAGCTAATTCCCCGGTGGAGTAGCCCCCGGCGA
GTCCGACCCCTCCCTTCGGGCCCCCTCCCAGCCCGCGGCCCGCCGCCTGGGCTCTGCGTG
TGGGAATGATGTGCGCATTGGAGGGTCTAAGTTCTTCATGTGCCTGGGGGGTCCTCCCTT
TTTTTTTCTTAGGCAACCAAATCTACTAATTTTACTAATCAGTAAATCCCAGGCAGCGGC
TGGAGAGACAAACGCTGTTTTCCCGCTTGATTCCCAGAACCTCTTCGCTTTTTATTTTTA
AAGAGGGAGACGATGAACTGAGCAGATCCACACCATGGAGCCTCGGATCTTACTGAGAAC
ATTCTGTTTGATCTTCGGTCTCGGAGCAGTTTGGGGGCTGGGTGTGGACCCCTCCCTACA
GATTGACGTCCTAACGGAGTTAGAACTTGGGGAGTCCACGACCGGAGTGCGCCAGGTCCC
CGGGCTGCATAATGGGACGAAAGCCTTTCTCTTTCAAGATACTCCCAGAAGTATAAAAGC
ATCCACTGCTACAGCTGAACAGTTTTTTCAGAAGCTGAGAAATAAACATGAATTTACTGT
TTTGGTGACCCTGAAACAGACCCACTTAAATTCTGGTGTGATTCTCTCCATCCACCACTT
GGATCACAGGTACCTGGAACTGGAAAGCAGTGGTCATCGGAATGAGGTCAGACTGCACTA
CCGCTCAGGTAGCCACCACCCTCACACAGAAGTGTTTCCTTACATTTTAGCTGATGATAA
ATGGCACAAACTCTCCTTAGCCATCAGCGCCTCCCACTTGATTTTACACATTGACTGCAA
TAAAATATATGAAAGAGTGGTGGAAAAGCCCTCCACAGACTTGCCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55637863|ref|XP_509013.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55637863|ref|XP_509013.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               846-963, - strand, RNAz p=0.520034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               846-963, - strand, RNAz p=0.520034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               787-963, gnl|bosTau2|chr17 (12586426-12586602)
               

               
               787-963, gnl|Hg17|chr12 (43460075-43459899)
               

               
               787-963, gnl|Mm7|chr15 (95436504-95436328)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               787-963, gnl|bosTau2|chr17 (12586426-12586602)
               

               
               787-963, gnl|Hg17|chr12 (43460075-43459899)
               

               
               787-963, gnl|Mm7|chr15 (95436504-95436328)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	787-963, gnl\|bosTau2\|chr17 (12586426-12586602)
	787-963, gnl\|Hg17\|chr12 (43460075-43459899)
	787-963, gnl\|Mm7\|chr15 (95436504-95436328)