Non-Coding RNA Search

Ss1.1-Ova1-OVRM10053F02.5

Sequence:


               
               AAGTATCTTTTTCCCCGAAACTGCTAAAACTTATTTTAACTTTTTCTTACGGGAATGGAA
AACTATTGGGACAGGAAAAGCCGCGGTGTGTCATAAAACAAAAGTTTAACTTTGTGAACA
AACGAGAGCTTTTGGGGGTGGGGTAAAAGTAGTTCTGGAGGGGGGTCATGACCCCGGACG
TCAGCGTCGGGCGCGTATTTCAGATTGGCGGTTCCGGTTCGGCAGTGCGACGGGTGCAAG
ATGTGGTTGCGAATGAACCAAGCTGCTGAAGAGTTTTACGCTCTTCTCCTGAAGAAATTT
AATGAAGAAAAGAAAGGAATCTGTAAAGACCCATTAATCTATGAGGCTGATGTTCAAGTG
CAGTTGATCAGCAAAGGCCAACCAAACCCTTTGAAAAATATTCTAAATGAAAGTGACATA
GTATTCGTCGTGGAAAATGTGCCTTTAGAAAAGGAAGAAACAAGTCATGTTGAAGAACTA
CAGTCGGAAGCAACTGCTATTTCTGATTTCTCTACTAGTGAAAATGCTGGACCACTTGCT
ATACCAGTTGGGAGAGCCAGGCAGTTAATTGGACTCTACACCATGGCTCACAATCCTAAT
ATGACCCATTTGAAGATTAATCGGCCAGTTACTGCCCTTCCACCCCTTTGGGTAAGGTGT
GACAGTTCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTATCTTTTTCCCCGAAACTGCTAAAACTTATTTTAACTTTTTCTTACGGGAATGGAA
AACTATTGGGACAGGAAAAGCCGCGGTGTGTCATAAAACAAAAGTTTAACTTTGTGAACA
AACGAGAGCTTTTGGGGGTGGGGTAAAAGTAGTTCTGGAGGGGGGTCATGACCCCGGACG
TCAGCGTCGGGCGCGTATTTCAGATTGGCGGTTCCGGTTCGGCAGTGCGACGGGTGCAAG
ATGTGGTTGCGAATGAACCAAGCTGCTGAAGAGTTTTACGCTCTTCTCCTGAAGAAATTT
AATGAAGAAAAGAAAGGAATCTGTAAAGACCCATTAATCTATGAGGCTGATGTTCAAGTG
CAGTTGATCAGCAAAGGCCAACCAAACCCTTTGAAAAATATTCTAAATGAAAGTGACATA
GTATTCGTCGTGGAAAATGTGCCTTTAGAAAAGGAAGAAACAAGTCATGTTGAAGAACTA
CAGTCGGAAGCAACTGCTATTTCTGATTTCTCTACTAGTGAAAATGCTGGACCACTTGCT
ATACCAGTTGGGAGAGCCAGGCAGTTAATTGGACTCTACACCATGGCTCACAATCCTAAT
ATGACCCATTTGAAGATTAATCGGCCAGTTACTGCCCTTCCACCCCTTTGGGTAAGGTGT
GACAGTTCAGAT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               9-294, gnl|bosTau2|chr17 (17300965-17300685)
               

               
               9-294, gnl|canFam2|chr30 (33766049-33766563)
               

               
               9-294, gnl|dasNov1|scaffold_16676 (42780-42281)
               

               
               9-294, gnl|echTel1|scaffold_288666 (91553-92067)
               

               
               9-294, gnl|hg17|chr15 (64584360-64584861)
               

               
               9-294, gnl|Hg17|chr15 (64584495-64584784)
               

               
               9-294, gnl|loxAfr1|scaffold_125238 (14-514)
               

               
               9-294, gnl|mm7|chr9 (64201512-64201024)
               

               
               9-294, gnl|Mm7|chr9 (64201380-64201072)
               

               
               9-294, gnl|monDom2|scaffold_12 (46380026-46379506)
               

               
               9-294, gnl|oryCun1|scaffold_108769 (8478-7985)
               

               
               9-294, gnl|panTro1|chr16 (65089416-65089939)
               

               
               9-294, gnl|rheMac2|chr7 (45038690-45039191)
               

               
               9-294, gnl|rn3|chr8 (68385733-68385230)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-294, gnl|bosTau2|chr17 (17300965-17300685)
               

               
               9-294, gnl|canFam2|chr30 (33766049-33766563)
               

               
               9-294, gnl|dasNov1|scaffold_16676 (42780-42281)
               

               
               9-294, gnl|echTel1|scaffold_288666 (91553-92067)
               

               
               9-294, gnl|hg17|chr15 (64584360-64584861)
               

               
               9-294, gnl|Hg17|chr15 (64584495-64584784)
               

               
               9-294, gnl|loxAfr1|scaffold_125238 (14-514)
               

               
               9-294, gnl|mm7|chr9 (64201512-64201024)
               

               
               9-294, gnl|Mm7|chr9 (64201380-64201072)
               

               
               9-294, gnl|monDom2|scaffold_12 (46380026-46379506)
               

               
               9-294, gnl|oryCun1|scaffold_108769 (8478-7985)
               

               
               9-294, gnl|panTro1|chr16 (65089416-65089939)
               

               
               9-294, gnl|rheMac2|chr7 (45038690-45039191)
               

               
               9-294, gnl|rn3|chr8 (68385733-68385230)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eep (0.122564)

	9-294, gnl\|bosTau2\|chr17 (17300965-17300685)
	9-294, gnl\|canFam2\|chr30 (33766049-33766563)
	9-294, gnl\|dasNov1\|scaffold_16676 (42780-42281)
	9-294, gnl\|echTel1\|scaffold_288666 (91553-92067)
	9-294, gnl\|hg17\|chr15 (64584360-64584861)
	9-294, gnl\|Hg17\|chr15 (64584495-64584784)
	9-294, gnl\|loxAfr1\|scaffold_125238 (14-514)
	9-294, gnl\|mm7\|chr9 (64201512-64201024)
	9-294, gnl\|Mm7\|chr9 (64201380-64201072)
	9-294, gnl\|monDom2\|scaffold_12 (46380026-46379506)
	9-294, gnl\|oryCun1\|scaffold_108769 (8478-7985)
	9-294, gnl\|panTro1\|chr16 (65089416-65089939)
	9-294, gnl\|rheMac2\|chr7 (45038690-45039191)
	9-294, gnl\|rn3\|chr8 (68385733-68385230)