Ss1.1-Ova1-OVRM10054B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGTATTTATGGGAGTCTGGGTTACCTGTTTCTGGAGTTTGGAAGAGGCGCCAGGCAGA ACTTGAGTACGAATGGGACACTGTTGAGTTACAGCAGGAAGAACAAGCCCGACCAGAATA TGAGGCACAGTGTACTCACGTGGTGATAAACGAGATCACTCAGGAAGAAGAGCGTGTTCC CTTTACCACGTGGGGAAAATGTATCCGTATAACCCTCTGTGCCAGTGCTGTCTTCTTCTG GATCCTGTTGATCATTGCTTCAGTCATTGGGATCATTGTCTACCGGCTCTCAGTGTTCAT TGTATTTTCTGCAAAACTTCCCAAGAACCTTAATGGAACAGACCCAATCCAGAAGTATCT AACACCACAGACGGCCACGTCCATCACTGCTTCCCTCATCAGCTTTATCATCATCATGAT CCTGAACACCATATATGAGAAAGTGGCCATCGTGATTACTAACTTTGAACTCCCCATGAC CCAGACTGATTATGAGAACAGCCTAACCTTGAAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGTATTTATGGGAGTCTGGGTTACCTGTTTCTGGAGTTTGGAAGAGGCGCCAGGCAGA ACTTGAGTACGAATGGGACACTGTTGAGTTACAGCAGGAAGAACAAGCCCGACCAGAATA TGAGGCACAGTGTACTCACGTGGTGATAAACGAGATCACTCAGGAAGAAGAGCGTGTTCC CTTTACCACGTGGGGAAAATGTATCCGTATAACCCTCTGTGCCAGTGCTGTCTTCTTCTG GATCCTGTTGATCATTGCTTCAGTCATTGGGATCATTGTCTACCGGCTCTCAGTGTTCAT TGTATTTTCTGCAAAACTTCCCAAGAACCTTAATGGAACAGACCCAATCCAGAAGTATCT AACACCACAGACGGCCACGTCCATCACTGCTTCCCTCATCAGCTTTATCATCATCATGAT CCTGAACACCATATATGAGAAAGTGGCCATCGTGATTACTAACTTTGAACTCCCCATGAC CCAGACTGATTATGAGAACAGCCTAACCTTGAAGAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 280-467, - strand, RNAz p=0.677012 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 280-467, - strand, RNAz p=0.677012 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 22-170, gnl|bosTau2|chr14 (33623739-33623890) | |
| 22-170, gnl|canFam2|chr27 (11933432-11933261) | |
| 22-170, gnl|danRer3|chrUn (91910317-91910128) | |
| 22-170, gnl|echTel1|scaffold_316955 (140675-140856) | |
| 22-170, gnl|fr1|chrUn (138353212-138353399) | |
| 22-170, gnl|galGal2|chr1 (27566391-27566563) | |
| 22-170, gnl|hg17|chr12 (44068194-44068376) | |
| 22-170, gnl|Hg17|chr12 (44068210-44068361) | |
| 22-170, gnl|loxAfr1|scaffold_2666 (111635-111812) | |
| 22-170, gnl|mm7|chr15 (95942264-95942442) | |
| 22-170, gnl|Mm7|chr15 (95942280-95942431) | |
| 22-170, gnl|oryCun1|scaffold_106606 (5742-5579) | |
| 22-170, gnl|panTro1|chr10 (44684219-44684401) | |
| 22-170, gnl|rheMac2|chr11 (42396396-42396578) | |
| 22-170, gnl|rn3|chr7 (134668014-134668192) | |
| 22-170, gnl|tetNig1|chr19 (3589656-3589487) | |
| 22-170, gnl|xenTro1|scaffold_66 (2098429-2098592) | |
| 241-467, gnl|bosTau2|chr14 (33633827-33634053) | |
| 241-467, gnl|canFam2|chr27 (11925785-11925548) | |
| 241-467, gnl|danRer3|chrUn (91902251-91902007) | |
| 241-467, gnl|dasNov1|scaffold_24527 (6580-6343) | |
| 241-467, gnl|echTel1|scaffold_316955 (145073-145305) | |
| 241-467, gnl|fr1|chrUn (138353984-138354216) | |
| 241-467, gnl|galGal2|chr1 (27569340-27569577) | |
| 241-467, gnl|hg17|chr12 (44081844-44082081) | |
| 241-467, gnl|Hg17|chr12 (44081844-44082070) | |
| 241-467, gnl|loxAfr1|scaffold_5268 (52102-51873) | |
| 241-467, gnl|mm7|chr15 (95949342-95949579) | |
| 241-467, gnl|Mm7|chr15 (95949342-95949568) | |
| 241-467, gnl|monDom2|scaffold_10 (68658776-68659010) | |
| 241-467, gnl|oryCun1|scaffold_106606 (432-195) | |
| 241-467, gnl|panTro1|chr10 (44710006-44710243) | |
| 241-467, gnl|rheMac2|chr11 (42409995-42410232) | |
| 241-467, gnl|rn3|chr7 (134674310-134674547) | |
| 241-467, gnl|tetNig1|chr19 (3589128-3588893) | |
| 241-467, gnl|xenTro1|scaffold_66 (2099597-2099837) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-170, gnl|bosTau2|chr14 (33623739-33623890) | |
| 22-170, gnl|canFam2|chr27 (11933432-11933261) | |
| 22-170, gnl|danRer3|chrUn (91910317-91910128) | |
| 22-170, gnl|echTel1|scaffold_316955 (140675-140856) | |
| 22-170, gnl|fr1|chrUn (138353212-138353399) | |
| 22-170, gnl|galGal2|chr1 (27566391-27566563) | |
| 22-170, gnl|hg17|chr12 (44068194-44068376) | |
| 22-170, gnl|Hg17|chr12 (44068210-44068361) | |
| 22-170, gnl|loxAfr1|scaffold_2666 (111635-111812) | |
| 22-170, gnl|mm7|chr15 (95942264-95942442) | |
| 22-170, gnl|Mm7|chr15 (95942280-95942431) | |
| 22-170, gnl|oryCun1|scaffold_106606 (5742-5579) | |
| 22-170, gnl|panTro1|chr10 (44684219-44684401) | |
| 22-170, gnl|rheMac2|chr11 (42396396-42396578) | |
| 22-170, gnl|rn3|chr7 (134668014-134668192) | |
| 22-170, gnl|tetNig1|chr19 (3589656-3589487) | |
| 22-170, gnl|xenTro1|scaffold_66 (2098429-2098592) | |
| 241-467, gnl|bosTau2|chr14 (33633827-33634053) | |
| 241-467, gnl|canFam2|chr27 (11925785-11925548) | |
| 241-467, gnl|danRer3|chrUn (91902251-91902007) | |
| 241-467, gnl|dasNov1|scaffold_24527 (6580-6343) | |
| 241-467, gnl|echTel1|scaffold_316955 (145073-145305) | |
| 241-467, gnl|fr1|chrUn (138353984-138354216) | |
| 241-467, gnl|galGal2|chr1 (27569340-27569577) | |
| 241-467, gnl|hg17|chr12 (44081844-44082081) | |
| 241-467, gnl|Hg17|chr12 (44081844-44082070) | |
| 241-467, gnl|loxAfr1|scaffold_5268 (52102-51873) | |
| 241-467, gnl|mm7|chr15 (95949342-95949579) | |
| 241-467, gnl|Mm7|chr15 (95949342-95949568) | |
| 241-467, gnl|monDom2|scaffold_10 (68658776-68659010) | |
| 241-467, gnl|oryCun1|scaffold_106606 (432-195) | |
| 241-467, gnl|panTro1|chr10 (44710006-44710243) | |
| 241-467, gnl|rheMac2|chr11 (42409995-42410232) | |
| 241-467, gnl|rn3|chr7 (134674310-134674547) | |
| 241-467, gnl|tetNig1|chr19 (3589128-3588893) | |
| 241-467, gnl|xenTro1|scaffold_66 (2099597-2099837) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |