Non-Coding RNA Search

Ss1.1-Ova1-OVRM10055G07.5

Sequence:


               
               TTTTGAGGAGGTTCAGAAATTGAGACCAAGAAATGAGCAGCGAGAGAATGAATTGATTAT
TTCTTTCTTGAGATGTTTATATGAAGAGAAACAAAAAGTTCATGTCCATATTGGGGAGAT
AAAGCAGGCATCACAGATTGCAGCGGAGAATATTGGAAGCGAGTTACCACCCAGTGCCAC
TCGGTTTAGACTAGATATGCTGAAAAACAAAGCAAAGAGATCTTTAACGGAGTCTTTAGA
AAGTATTTTGTCCCGGGGTAATAAAGCCAGAGGCCTCCAGGAGCACTCCACCAGCCTGGA
TCTGGACAGCTCCGTGTCTAGCACATTAAGTAGCACCAGCAAAGAGCCGTCTGTGTGTGA
AAAGGAGGCCCTGCCCATCTCCGAGAGCGCCTTCCGGCTCCTCGGCTCCTCGGACGACCT
GTCCAGTGACCCGGAGGGCCAGCCCACGGAGGAGCCGGCCCTGCCCTCGCCGCAGCAGGG
CTTCCGGAGGCGAGCCAACACCCTGAGTCACGTGCCCGCGGAGTGCCCGGAGCCCCCGGA
GCCCGCCCGCGCCTCTCCAGGGCCCTCGCAGAGGAAGCTTGTGAGGTACCACTCAGTGAG
CACAGAGACGCCTCACGAACGAAAGTAAGATTTGTTTAAGCTGTCGATTGCTTGTGTAGG
TGGCCGGGGCAGGTCTGTGATGGACCAGGTATGTGCGTCCCAGGCGTGTTGATTGGGTGA
AAGAGGAAGCCGAGTCAGCTGTCACTGTGGGCTTAAAAAGGGGGAAACTGGAGGCAGGGA
CGCATCCCTCCCACCTTCCTCCCTTGGGAAACACGTAGATGTGCGAGATGCTTGTCATTT
CTTCACGTGCAGGGACCGTGAGGAAGCAGGTGAAGCAGCAGAAATGACCTGTCACATGCA
TAAGGGTCACTCTGGCCACAGTGAGGGGCAGCCCTGATTGTGGGGAAAGTGGCGACGGGC
CAGCAGGTGAATGGGCCTCTCGGAGACCTGGGCCAGAGATGCGGAGATGGGTCCCTGGCA
GAGCACGAGGCAGCGGGGTTCTGTCCCCGCTCCGTCCCCACCCAGCCAGGACCTGAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGAGGAGGTTCAGAAATTGAGACCAAGAAATGAGCAGCGAGAGAATGAATTGATTAT
TTCTTTCTTGAGATGTTTATATGAAGAGAAACAAAAAGTTCATGTCCATATTGGGGAGAT
AAAGCAGGCATCACAGATTGCAGCGGAGAATATTGGAAGCGAGTTACCACCCAGTGCCAC
TCGGTTTAGACTAGATATGCTGAAAAACAAAGCAAAGAGATCTTTAACGGAGTCTTTAGA
AAGTATTTTGTCCCGGGGTAATAAAGCCAGAGGCCTCCAGGAGCACTCCACCAGCCTGGA
TCTGGACAGCTCCGTGTCTAGCACATTAAGTAGCACCAGCAAAGAGCCGTCTGTGTGTGA
AAAGGAGGCCCTGCCCATCTCCGAGAGCGCCTTCCGGCTCCTCGGCTCCTCGGACGACCT
GTCCAGTGACCCGGAGGGCCAGCCCACGGAGGAGCCGGCCCTGCCCTCGCCGCAGCAGGG
CTTCCGGAGGCGAGCCAACACCCTGAGTCACGTGCCCGCGGAGTGCCCGGAGCCCCCGGA
GCCCGCCCGCGCCTCTCCAGGGCCCTCGCAGAGGAAGCTTGTGAGGTACCACTCAGTGAG
CACAGAGACGCCTCACGAACGAAAGTAAGATTTGTTTAAGCTGTCGATTGCTTGTGTAGG
TGGCCGGGGCAGGTCTGTGATGGACCAGGTATGTGCGTCCCAGGCGTGTTGATTGGGTGA
AAGAGGAAGCCGAGTCAGCTGTCACTGTGGGCTTAAAAAGGGGGAAACTGGAGGCAGGGA
CGCATCCCTCCCACCTTCCTCCCTTGGGAAACACGTAGATGTGCGAGATGCTTGTCATTT
CTTCACGTGCAGGGACCGTGAGGAAGCAGGTGAAGCAGCAGAAATGACCTGTCACATGCA
TAAGGGTCACTCTGGCCACAGTGAGGGGCAGCCCTGATTGTGGGGAAAGTGGCGACGGGC
CAGCAGGTGAATGGGCCTCTCGGAGACCTGGGCCAGAGATGCGGAGATGGGTCCCTGGCA
GAGCACGAGGCAGCGGGGTTCTGTCCCCGCTCCGTCCCCACCCAGCCAGGACCTGAGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814967|ref|XP_595910.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814967|ref|XP_595910.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-625, gnl|bosTau2|chr14 (35430496-35431122)
               

               
               1-625, gnl|Hg17|chr4 (37852051-37878386)
               

               
               1-625, gnl|Mm7|chr5 (63625064-63639843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-625, gnl|bosTau2|chr14 (35430496-35431122)
               

               
               1-625, gnl|Hg17|chr4 (37852051-37878386)
               

               
               1-625, gnl|Mm7|chr5 (63625064-63639843)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cut (0.169924)

	1-625, gnl\|bosTau2\|chr14 (35430496-35431122)
	1-625, gnl\|Hg17\|chr4 (37852051-37878386)
	1-625, gnl\|Mm7\|chr5 (63625064-63639843)