Non-Coding RNA Search

Ss1.1-Ova1-OVRM10056E08.5

Sequence:


               
               AATATAGCCGCTCGGCGGAGGCGCGAGCGCGCGGGGGCAGCGCAGCGGGCAGGGGCCGAG
ATCCAGACACCCGAGCAGCTGGCCACCGGGGCGGCCCAGAGAAGGGCGAGCACCATGAGC
AGCAAGTGCGACGTGGTCGTGGTGGGGGGCGGCATCTCAGGTATGGCAGCAGCCAAACTT
CTGCATGACTCTGGCCTGAGTGTGATTGTTCTGGAAGCCCGGGACCGCGTGGGAGGCAGG
ACTTACACCATCAGGAACCAACAAGTTAAATATGTGGACCTTGGAGGATCTTATGTTGGG
CCAACTCAGAATCGCATCTTAAGATTGTCCAAGGAGCTAGGATTGGAGACCTACAAAGTG
AATGAAGTGGAGCGTCTGATTCACTATGTAAAGGGCAAATCCTACCCCTTCAGGGGCCCA
TTACCACCTGTGAGGAATCCGATTACCTTCCTAGATCTTAACAACCTTTGGAGGACGGTG
GATGACATGGGACGAGAGATTCCCAGTGATGCCCCATGGAAGGCGCCCCTTGCAGAACAG
TGGGACCAGATGACAATGAAGGAGCTGTTGGACAAGCTCTGCTGGACTGAATCTTCGAAG
CAGCTGGCCACCCTTTTTGTGAACCTGTGTGTCACCGCGGAGACCCATGAGGTCTCTGCT
CTCTGGTTCCTGTGGTATGTGAAGCAGTGTGGAGGCACCACCAGGATCATCTCAACAACT
AACGGAGGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATAGCCGCTCGGCGGAGGCGCGAGCGCGCGGGGGCAGCGCAGCGGGCAGGGGCCGAG
ATCCAGACACCCGAGCAGCTGGCCACCGGGGCGGCCCAGAGAAGGGCGAGCACCATGAGC
AGCAAGTGCGACGTGGTCGTGGTGGGGGGCGGCATCTCAGGTATGGCAGCAGCCAAACTT
CTGCATGACTCTGGCCTGAGTGTGATTGTTCTGGAAGCCCGGGACCGCGTGGGAGGCAGG
ACTTACACCATCAGGAACCAACAAGTTAAATATGTGGACCTTGGAGGATCTTATGTTGGG
CCAACTCAGAATCGCATCTTAAGATTGTCCAAGGAGCTAGGATTGGAGACCTACAAAGTG
AATGAAGTGGAGCGTCTGATTCACTATGTAAAGGGCAAATCCTACCCCTTCAGGGGCCCA
TTACCACCTGTGAGGAATCCGATTACCTTCCTAGATCTTAACAACCTTTGGAGGACGGTG
GATGACATGGGACGAGAGATTCCCAGTGATGCCCCATGGAAGGCGCCCCTTGCAGAACAG
TGGGACCAGATGACAATGAAGGAGCTGTTGGACAAGCTCTGCTGGACTGAATCTTCGAAG
CAGCTGGCCACCCTTTTTGTGAACCTGTGTGTCACCGCGGAGACCCATGAGGTCTCTGCT
CTCTGGTTCCTGTGGTATGTGAAGCAGTGTGGAGGCACCACCAGGATCATCTCAACAACT
AACGGAGGGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               276-394, + strand, RNAz p=0.654562

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-394, + strand, RNAz p=0.654562

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-173, gnl|bosTau2|chrX (29609610-29609437)
               

               
               1-173, gnl|Hg17|chrX (43497950-43497739)
               

               
               1-173, gnl|Mm7|chrX (15250534-15250365)
               


               
               255-394, gnl|bosTau2|chrX (29561919-29561780)
               

               
               255-394, gnl|Hg17|chrX (43454506-43454367)
               

               
               255-394, gnl|Mm7|chrX (15201666-15201527)
               


               
               591-732, gnl|bosTau2|chrX (29513232-29513091)
               

               
               591-732, gnl|Hg17|chrX (43412767-43412626)
               

               
               591-732, gnl|Mm7|chrX (15169263-15169122)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-173, gnl|bosTau2|chrX (29609610-29609437)
               

               
               1-173, gnl|Hg17|chrX (43497950-43497739)
               

               
               1-173, gnl|Mm7|chrX (15250534-15250365)
               


               
               255-394, gnl|bosTau2|chrX (29561919-29561780)
               

               
               255-394, gnl|Hg17|chrX (43454506-43454367)
               

               
               255-394, gnl|Mm7|chrX (15201666-15201527)
               


               
               591-732, gnl|bosTau2|chrX (29513232-29513091)
               

               
               591-732, gnl|Hg17|chrX (43412767-43412626)
               

               
               591-732, gnl|Mm7|chrX (15169263-15169122)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               pla (0.133672)

	1-173, gnl\|bosTau2\|chrX (29609610-29609437)
	1-173, gnl\|Hg17\|chrX (43497950-43497739)
	1-173, gnl\|Mm7\|chrX (15250534-15250365)

	255-394, gnl\|bosTau2\|chrX (29561919-29561780)
	255-394, gnl\|Hg17\|chrX (43454506-43454367)
	255-394, gnl\|Mm7\|chrX (15201666-15201527)

	591-732, gnl\|bosTau2\|chrX (29513232-29513091)
	591-732, gnl\|Hg17\|chrX (43412767-43412626)
	591-732, gnl\|Mm7\|chrX (15169263-15169122)