Non-Coding RNA Search

Ss1.1-Ova1-OVRM10057A09.5

Sequence:


               
               AGTCTTTTCCACGTTTGCAAACGCCGCCGAGCGCCCGGGCTCGCCCCACGCTGCCCGAGC
TCTGTGCACCCTCGCCGGCTCCGCGCCGCGCCCCCTCCTCTCCTCGCTGCCCCGGATGGC
GGTCAGGGCCCGGAGTTGGCGGCCCCCGCCACCGCCGCTGCTCCTGCTCCTGCTCTGGGT
GACGGGGCAGGCGGCCCCCGTGGCGGGCCTGGGCCTGGGCTCCGACACCGAACTGCAGAT
CGAGCGGCGCTTCGTGCCCGACGAGTGTCCGCGCACCGTGCACAGTGGCGACTTCGTGCG
CTACCACTACGTGGGGACGTTTCCCGACGGCCAGAAGTTCGACTCCAGCTATGACAGAGA
CTCCACTTTCAACGTGTTTGTGGGAAAAGGGCAGCTGATTGCAGGGATGGACCAAGCTCT
GGTCGGGATGTGTGTAAATGAGAGGCGTTTTGTGAAGATCCCTCCAAAGCTCGCCTACGG
AAGTGAAGGGGTTTCTGGTGTTATCCCCCCAAATTCAGTGCTGCATTTTGATGTCCTTCT
GATGGATATTTGGAATTCGGAAGATCAGGTTCAGGTTCACACTTATTTCAAGCCCCCCAG
TTGCTCTCGGACCATCCAGGTGTCTGATTTTGTAAGGTACCACTACAACGGAACGTTCTT
GGATGGGACACTGTTTGATTCGAGTCACAATCGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTTTTCCACGTTTGCAAACGCCGCCGAGCGCCCGGGCTCGCCCCACGCTGCCCGAGC
TCTGTGCACCCTCGCCGGCTCCGCGCCGCGCCCCCTCCTCTCCTCGCTGCCCCGGATGGC
GGTCAGGGCCCGGAGTTGGCGGCCCCCGCCACCGCCGCTGCTCCTGCTCCTGCTCTGGGT
GACGGGGCAGGCGGCCCCCGTGGCGGGCCTGGGCCTGGGCTCCGACACCGAACTGCAGAT
CGAGCGGCGCTTCGTGCCCGACGAGTGTCCGCGCACCGTGCACAGTGGCGACTTCGTGCG
CTACCACTACGTGGGGACGTTTCCCGACGGCCAGAAGTTCGACTCCAGCTATGACAGAGA
CTCCACTTTCAACGTGTTTGTGGGAAAAGGGCAGCTGATTGCAGGGATGGACCAAGCTCT
GGTCGGGATGTGTGTAAATGAGAGGCGTTTTGTGAAGATCCCTCCAAAGCTCGCCTACGG
AAGTGAAGGGGTTTCTGGTGTTATCCCCCCAAATTCAGTGCTGCATTTTGATGTCCTTCT
GATGGATATTTGGAATTCGGAAGATCAGGTTCAGGTTCACACTTATTTCAAGCCCCCCAG
TTGCTCTCGGACCATCCAGGTGTCTGATTTTGTAAGGTACCACTACAACGGAACGTTCTT
GGATGGGACACTGTTTGATTCGAGTCACAATCGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55628388|ref|XP_519032.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55628388|ref|XP_519032.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-351, gnl|bosTau2|chr4 (34490269-34490615)
               

               
               1-351, gnl|Hg17|chr7 (32770329-32770649)
               

               
               1-351, gnl|Mm7|chr6 (56795504-56795800)
               


               
               495-684, gnl|bosTau2|chr4 (34505028-34505217)
               

               
               495-684, gnl|Hg17|chr7 (32788034-32788223)
               

               
               495-684, gnl|Mm7|chr6 (56813933-56814122)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-351, gnl|bosTau2|chr4 (34490269-34490615)
               

               
               1-351, gnl|Hg17|chr7 (32770329-32770649)
               

               
               1-351, gnl|Mm7|chr6 (56795504-56795800)
               


               
               495-684, gnl|bosTau2|chr4 (34505028-34505217)
               

               
               495-684, gnl|Hg17|chr7 (32788034-32788223)
               

               
               495-684, gnl|Mm7|chr6 (56813933-56814122)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.253004)
               

               
               nca (0.136874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               nca (0.136874)

	1-351, gnl\|bosTau2\|chr4 (34490269-34490615)
	1-351, gnl\|Hg17\|chr7 (32770329-32770649)
	1-351, gnl\|Mm7\|chr6 (56795504-56795800)

	495-684, gnl\|bosTau2\|chr4 (34505028-34505217)
	495-684, gnl\|Hg17\|chr7 (32788034-32788223)
	495-684, gnl\|Mm7\|chr6 (56813933-56814122)