Non-Coding RNA Search

Ss1.1-Ova1-OVRM10058D05.5

Sequence:


               
               ATTTACCGCACAGCTGGTCGGGGGGCTAGATATTCACAAGGCCTCGTCTGAGGATGGGAG
GTCGTAGAAGGTGGTGGAATGTGGCAAAGTAGGAAGTCGCTCCTGATCAGGGGAAGCAGC
TGCCTGGCCAGAGGGAGGGGGAGAGGTGATCAGGCCGGTGCTGCCGGCCCAGCGGAGAGT
GTGTTTACCTGGGAGGGGAGGTGAACCCAGGGAGCCGTAAGCAGAGGATGTGTGTTTTCA
GAGCTCTGCTTGGGGCCACCAGGAGAGGATGGGGTGCTCGTCGCTGACAACTGGAGTGAC
CCCCAGGATTTCCCAGGGCCCTGGGGCTTCCCTAGCCCCTTGTCAGAGACGTGACCTGGC
AGACGGATCGTTACATGCATTGGCGTTGACGATCGTAAATAGCCAGTCAATAGTTAGATC
ACTTTGGCTGTTCATTACTTCATTATTTGCAGGGGCCTCTGCACGGAGGAGTATCGATAG
CGAGATGGCTGGCCAGTTAATTACTGTATCGAAACAAGGTTCCCTTGTATCCTCGGCTAG
GCTCCAGGGGACTGTAACAGCGGGACAGGCTGTCACCCCGAGGGTGTGGTCACTCATTCC
CAGGCTCTCGGTCCCTTCCCTCTTCTAGCTGCCAAGGGGGAGGCAGGGTCCAGGGCAGGT
TCTTAGAGCCTTAGAGGAGTCGCCATCCCCCAGTGTAGCATATTTGCAGGATGGGGTCCC
CCAGTTTCACTGCCGTTCCCCATCATCTGTAGCCCTGAAAGGACTCCATCCCCTTGCTCC
CTGGAAGGAACTGTGTGCTAAAGAGCCATCCCTAAGGACCAAGGAGGCTGTACTGCCCCT
TGTCTACATTTCTGTCTCCTTTCTTAGGAAGGGGAGAGTCTGTGGCCCTGAGTGGGTTAA
GAGGAAGGCCAGCAGCTGGAGTGGTGCTGACAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTACCGCACAGCTGGTCGGGGGGCTAGATATTCACAAGGCCTCGTCTGAGGATGGGAG
GTCGTAGAAGGTGGTGGAATGTGGCAAAGTAGGAAGTCGCTCCTGATCAGGGGAAGCAGC
TGCCTGGCCAGAGGGAGGGGGAGAGGTGATCAGGCCGGTGCTGCCGGCCCAGCGGAGAGT
GTGTTTACCTGGGAGGGGAGGTGAACCCAGGGAGCCGTAAGCAGAGGATGTGTGTTTTCA
GAGCTCTGCTTGGGGCCACCAGGAGAGGATGGGGTGCTCGTCGCTGACAACTGGAGTGAC
CCCCAGGATTTCCCAGGGCCCTGGGGCTTCCCTAGCCCCTTGTCAGAGACGTGACCTGGC
AGACGGATCGTTACATGCATTGGCGTTGACGATCGTAAATAGCCAGTCAATAGTTAGATC
ACTTTGGCTGTTCATTACTTCATTATTTGCAGGGGCCTCTGCACGGAGGAGTATCGATAG
CGAGATGGCTGGCCAGTTAATTACTGTATCGAAACAAGGTTCCCTTGTATCCTCGGCTAG
GCTCCAGGGGACTGTAACAGCGGGACAGGCTGTCACCCCGAGGGTGTGGTCACTCATTCC
CAGGCTCTCGGTCCCTTCCCTCTTCTAGCTGCCAAGGGGGAGGCAGGGTCCAGGGCAGGT
TCTTAGAGCCTTAGAGGAGTCGCCATCCCCCAGTGTAGCATATTTGCAGGATGGGGTCCC
CCAGTTTCACTGCCGTTCCCCATCATCTGTAGCCCTGAAAGGACTCCATCCCCTTGCTCC
CTGGAAGGAACTGTGTGCTAAAGAGCCATCCCTAAGGACCAAGGAGGCTGTACTGCCCCT
TGTCTACATTTCTGTCTCCTTTCTTAGGAAGGGGAGAGTCTGTGGCCCTGAGTGGGTTAA
GAGGAAGGCCAGCAGCTGGAGTGGTGCTGACAACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-504, - strand, RNAz p=0.75038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-504, - strand, RNAz p=0.75038

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               436-516, + strand, RNAmicro p=0.979796

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               436-516, + strand, RNAmicro p=0.979796

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-921, gnl|bosTau2|chr15 (10904172-10903270)
               

               
               9-921, gnl|Hg17|chr11 (113624418-113625981)
               

               
               9-921, gnl|Mm7|chr9 (48630720-48629808)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-921, gnl|bosTau2|chr15 (10904172-10903270)
               

               
               9-921, gnl|Hg17|chr11 (113624418-113625981)
               

               
               9-921, gnl|Mm7|chr9 (48630720-48629808)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	9-921, gnl\|bosTau2\|chr15 (10904172-10903270)
	9-921, gnl\|Hg17\|chr11 (113624418-113625981)
	9-921, gnl\|Mm7\|chr9 (48630720-48629808)