Non-Coding RNA Search

Ss1.1-Ova1-OVRM10058F06.5

Sequence:


               
               AAACTTTATTGTTCCCGTTGGGGCGGTGAGGATGTCGGTGAATTATGCGGCTGGCCTGTC
GCCGTACGCAGACAAGGGCAAGTGCGGTCTCCCCGAGGTGTTTGACCCCCCTGAGGAATT
GGAGCAGAAGGTATGGGAGCTGGCACAGCTGGTCTGGCAGTCCTCCAACGTGGTGTTCCA
CACGGGCGCGGGCATCAGCACCGCCTCAGGCATCCCTGACTTCAGGGGTCCCCATGGTGT
CTGGACAATGGAGGAGCGAGGCCTGGCCCCCAAGTTCGACACCACCTTCGAGAACGCGAG
GCCCACGAAGACCCACATGGCACTGGTGCAGCTGGAGCGCGTGGGCCTCCTCCGCTTCCT
GGTCAGCCAGAACGTGGATGGGCTGCATGTGCGATCCGGCTTCCCCAGGGACAAGCTGGC
AGAGCTTCATGGAAACATGTTCGTAGAAGAATGTGTCAAGTGTAAGACGCAATACGTCCG
GGACACCGTGGTGGGGAGCATGGGCCTGAAGGCTACCGGCCGCCTCTGCACCGTGGCCAA
GTCAAGGGGGCTACGGGCCTGCAGGGGGGAGCTGAGAGACACCATCCTAGACTGGGAGGA
TGCCCTGCCTGACCGAGACCTCACCCTCGCTGACGAGGCCAGCAGGAACGCCGACCTGTC
CATCACGCTGGGCACCTCCCTGCAAATCCGGCCCAGCGGGAACCTGCCGCTCACCACCAA
ACGCCGGGGGGGCCGGCTGGTCATTGTCAACCTTCAGCCCACCAAGCACGACCGCCATGC
AGACCTGCGTATCCACGGCTACGTAGATGAGGTCATGACCCGGCTCATGAAGCACCTGGG
CCTGGAGATCCCGGCCTGGGACGGCCCCCGTGTCCTAGAGAGGGCGCTGCCACCACTGCC
CCGCCCGCCCGCCCCCAAGCTGGAGCCCAAGGAGGAGGCTCCTGCCCAGTTCAACTGCCC
AGCACCAGCCAGCACCAAGCAGGAGCCCAAAACAGAGCCCTGCGCCCAGCACAACGGCTC
CGGGCCCACCAGCCCCAAAAGGGAGCAGCTGGACAGTCCTGCCCCCCACAAGCCCCCCAA
AAGAGCGAAGGCGGAGGTGATTCCCAGCTGACCCCCGGGGCCTGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTATTGTTCCCGTTGGGGCGGTGAGGATGTCGGTGAATTATGCGGCTGGCCTGTC
GCCGTACGCAGACAAGGGCAAGTGCGGTCTCCCCGAGGTGTTTGACCCCCCTGAGGAATT
GGAGCAGAAGGTATGGGAGCTGGCACAGCTGGTCTGGCAGTCCTCCAACGTGGTGTTCCA
CACGGGCGCGGGCATCAGCACCGCCTCAGGCATCCCTGACTTCAGGGGTCCCCATGGTGT
CTGGACAATGGAGGAGCGAGGCCTGGCCCCCAAGTTCGACACCACCTTCGAGAACGCGAG
GCCCACGAAGACCCACATGGCACTGGTGCAGCTGGAGCGCGTGGGCCTCCTCCGCTTCCT
GGTCAGCCAGAACGTGGATGGGCTGCATGTGCGATCCGGCTTCCCCAGGGACAAGCTGGC
AGAGCTTCATGGAAACATGTTCGTAGAAGAATGTGTCAAGTGTAAGACGCAATACGTCCG
GGACACCGTGGTGGGGAGCATGGGCCTGAAGGCTACCGGCCGCCTCTGCACCGTGGCCAA
GTCAAGGGGGCTACGGGCCTGCAGGGGGGAGCTGAGAGACACCATCCTAGACTGGGAGGA
TGCCCTGCCTGACCGAGACCTCACCCTCGCTGACGAGGCCAGCAGGAACGCCGACCTGTC
CATCACGCTGGGCACCTCCCTGCAAATCCGGCCCAGCGGGAACCTGCCGCTCACCACCAA
ACGCCGGGGGGGCCGGCTGGTCATTGTCAACCTTCAGCCCACCAAGCACGACCGCCATGC
AGACCTGCGTATCCACGGCTACGTAGATGAGGTCATGACCCGGCTCATGAAGCACCTGGG
CCTGGAGATCCCGGCCTGGGACGGCCCCCGTGTCCTAGAGAGGGCGCTGCCACCACTGCC
CCGCCCGCCCGCCCCCAAGCTGGAGCCCAAGGAGGAGGCTCCTGCCCAGTTCAACTGCCC
AGCACCAGCCAGCACCAAGCAGGAGCCCAAAACAGAGCCCTGCGCCCAGCACAACGGCTC
CGGGCCCACCAGCCCCAAAAGGGAGCAGCTGGACAGTCCTGCCCCCCACAAGCCCCCCAA
AAGAGCGAAGGCGGAGGTGATTCCCAGCTGACCCCCGGGGCCTGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102160|ref|XP_542163.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102160|ref|XP_542163.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               886-1005, - strand, RNAz p=0.546966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               886-1005, - strand, RNAz p=0.546966

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               223-409, gnl|bosTau2|chr7 (15436643-15436829)
               

               
               223-409, gnl|canFam2|chr20 (58366906-58366685)
               

               
               223-409, gnl|danRer3|chr20 (17883224-17883026)
               

               
               223-409, gnl|fr1|chrUn (275828019-275827822)
               

               
               223-409, gnl|galGal2|chr28 (1473323-1473099)
               

               
               223-409, gnl|hg17|chr19 (4130088-4130324)
               

               
               223-409, gnl|Hg17|chr19 (4130286-4130100)
               

               
               223-409, gnl|mm7|chr10 (81421020-81421240)
               

               
               223-409, gnl|Mm7|chr10 (81421206-81421020)
               

               
               223-409, gnl|monDom2|scaffold_85 (954504-954717)
               

               
               223-409, gnl|panTro1|chr20 (4408672-4408908)
               

               
               223-409, gnl|rheMac2|chr19 (4034400-4034636)
               

               
               223-409, gnl|rn3|chr7 (9557278-9557054)
               

               
               223-409, gnl|tetNig1|chr15 (4612999-4612795)
               

               
               223-409, gnl|xenTro1|scaffold_1176 (150202-150009)
               


               
               767-1126, gnl|bosTau2|chr7 (15438798-15439157)
               

               
               767-1126, gnl|Hg17|chr19 (4125946-4125599)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-409, gnl|bosTau2|chr7 (15436643-15436829)
               

               
               223-409, gnl|canFam2|chr20 (58366906-58366685)
               

               
               223-409, gnl|danRer3|chr20 (17883224-17883026)
               

               
               223-409, gnl|fr1|chrUn (275828019-275827822)
               

               
               223-409, gnl|galGal2|chr28 (1473323-1473099)
               

               
               223-409, gnl|hg17|chr19 (4130088-4130324)
               

               
               223-409, gnl|Hg17|chr19 (4130286-4130100)
               

               
               223-409, gnl|mm7|chr10 (81421020-81421240)
               

               
               223-409, gnl|Mm7|chr10 (81421206-81421020)
               

               
               223-409, gnl|monDom2|scaffold_85 (954504-954717)
               

               
               223-409, gnl|panTro1|chr20 (4408672-4408908)
               

               
               223-409, gnl|rheMac2|chr19 (4034400-4034636)
               

               
               223-409, gnl|rn3|chr7 (9557278-9557054)
               

               
               223-409, gnl|tetNig1|chr15 (4612999-4612795)
               

               
               223-409, gnl|xenTro1|scaffold_1176 (150202-150009)
               


               
               767-1126, gnl|bosTau2|chr7 (15438798-15439157)
               

               
               767-1126, gnl|Hg17|chr19 (4125946-4125599)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	223-409, gnl\|bosTau2\|chr7 (15436643-15436829)
	223-409, gnl\|canFam2\|chr20 (58366906-58366685)
	223-409, gnl\|danRer3\|chr20 (17883224-17883026)
	223-409, gnl\|fr1\|chrUn (275828019-275827822)
	223-409, gnl\|galGal2\|chr28 (1473323-1473099)
	223-409, gnl\|hg17\|chr19 (4130088-4130324)
	223-409, gnl\|Hg17\|chr19 (4130286-4130100)
	223-409, gnl\|mm7\|chr10 (81421020-81421240)
	223-409, gnl\|Mm7\|chr10 (81421206-81421020)
	223-409, gnl\|monDom2\|scaffold_85 (954504-954717)
	223-409, gnl\|panTro1\|chr20 (4408672-4408908)
	223-409, gnl\|rheMac2\|chr19 (4034400-4034636)
	223-409, gnl\|rn3\|chr7 (9557278-9557054)
	223-409, gnl\|tetNig1\|chr15 (4612999-4612795)
	223-409, gnl\|xenTro1\|scaffold_1176 (150202-150009)

	767-1126, gnl\|bosTau2\|chr7 (15438798-15439157)
	767-1126, gnl\|Hg17\|chr19 (4125946-4125599)