Non-Coding RNA Search

Ss1.1-Ova1-OVRM10059E05.5

Sequence:


               
               GAGTCGCTGCTGAGGCGGCCGCGGGCGCGGGTCGCGTCGGCGCTGCTCCGCGGGGCCGGG
CCGGGCTGGCAGCCGCTGGCTCCTGGCGGTGAGGGCAGGCTCCCGAGGTGGGCGGAATGG
CCCCCACCTAGGGCGGTGGGAGAAGCGGCTGAGCCCAGGATGCTGGGGAGGCGGCGTGGC
GGCTCCTCACTCATCCCAGATGTTGATCGTCTTTATGAAGTAGAATCTCCATGGCCTGAA
CATTTTCTGAAAATCCTTTGGAGCAAAATATCTGTTTAGTAGCAAGATTACCAAATCAAG
ATGGTTGGAAAACTGAAGCAGAACTTACTATTGGCATGTCTGGTGATTAGTTCTGTGACT
GTATTTTACTTGGGCCAACACGCCATGGAATGTCATCACCGAATAGAGGAACGCAGCCAG
CCCCTCAGATTGGAGAGCGCAAAGACCACTGTGCCAACTGTCCTGGACATAAAAGCCAAT
AAAACCTTTGCCTATCACAAAGATATGCCTTTAATATTTATTGGAGGTGTGCCTCGGAGT
GGAACCACACTCATGAGGGCCATGCTAGATGCACACCCTGATATTCGCTGCGGAGAGGAA
ACCAGGGTCATTCCTCGAATCCTGGCTCTGAAGCAGATGTGGTCACGGTCGAGTAAAGAG
AAAATACGCTTGGATGAGGCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCGCTGCTGAGGCGGCCGCGGGCGCGGGTCGCGTCGGCGCTGCTCCGCGGGGCCGGG
CCGGGCTGGCAGCCGCTGGCTCCTGGCGGTGAGGGCAGGCTCCCGAGGTGGGCGGAATGG
CCCCCACCTAGGGCGGTGGGAGAAGCGGCTGAGCCCAGGATGCTGGGGAGGCGGCGTGGC
GGCTCCTCACTCATCCCAGATGTTGATCGTCTTTATGAAGTAGAATCTCCATGGCCTGAA
CATTTTCTGAAAATCCTTTGGAGCAAAATATCTGTTTAGTAGCAAGATTACCAAATCAAG
ATGGTTGGAAAACTGAAGCAGAACTTACTATTGGCATGTCTGGTGATTAGTTCTGTGACT
GTATTTTACTTGGGCCAACACGCCATGGAATGTCATCACCGAATAGAGGAACGCAGCCAG
CCCCTCAGATTGGAGAGCGCAAAGACCACTGTGCCAACTGTCCTGGACATAAAAGCCAAT
AAAACCTTTGCCTATCACAAAGATATGCCTTTAATATTTATTGGAGGTGTGCCTCGGAGT
GGAACCACACTCATGAGGGCCATGCTAGATGCACACCCTGATATTCGCTGCGGAGAGGAA
ACCAGGGTCATTCCTCGAATCCTGGCTCTGAAGCAGATGTGGTCACGGTCGAGTAAAGAG
AAAATACGCTTGGATGAGGCTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6581081|gb|AAF18448.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6581081|gb|AAF18448.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               198-684, gnl|bosTau2|chr25 (23869438-23869924)
               

               
               198-684, gnl|Hg17|chr7 (65149460-65149946)
               

               
               198-684, gnl|Mm7|chr5 (129339411-129339897)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-684, gnl|bosTau2|chr25 (23869438-23869924)
               

               
               198-684, gnl|Hg17|chr7 (65149460-65149946)
               

               
               198-684, gnl|Mm7|chr5 (129339411-129339897)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ute (0.132784)

	198-684, gnl\|bosTau2\|chr25 (23869438-23869924)
	198-684, gnl\|Hg17\|chr7 (65149460-65149946)
	198-684, gnl\|Mm7\|chr5 (129339411-129339897)