Ss1.1-Ova1-OVRM10065F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGTGACCGAGATCGGCAGAATCTGCCGTACTTGCAGCTAGCAAACAGCGGGCAGGGTG GACGAGCCCGGTCCGGGTTCCGGCGAGCAGCTCCCCGCGGCGCCCGGAAGGTTAAGCTGA AACGGCTGCTCAGCTTCCAAGATGTTGCCCCCCAAAATGCATGTGCTTGCCGTACTTGCA AGCTGCCTGGCGCTGGCTCAGCCTTTTGACTGGCAACGGGTTCCGGCGAGCAGCTCCCCG CGGCGCCCGGCATGGGTCAGTAAGATCCAAGCGCTGATGGCTGCTGCAGGCTTTGGCCAA ACGAAAATCCCCAGAGGAAATGGATCATACTCCGTCGGTTGTACCGACCTGATGTTTGAT TACACTCAGAAGGGCACCTTCCTGCGTTTGTATTATCCGTCCCAAGATGGTGACCCTTCT GACACCCTCTGGATCCCAGACAAAGAGTATTTTTGGGGACTTAGTAAATTTCTCGGAACA CACTGGCTTCTAGGCAAAATTCTAAGCTTATTTTTTGGTTCAATGACAACTCCTGCAGCC TGGAATTCCCCTCTGAGGACTGGTGAAAAATACCCACTCATCATTTTTTCTCATGGTCTT GGAGCATTCAGGACAATTTATTCTGCGATTGGCACTGACCTGGCATCTTACGGGTTTATA GTTGCTGCTGTAGAACACAGAGATGGATCTGCATCTGCGACTTACTTTTTCAAGGACCAA TCTGCTGCAGAAATAAGGAACAAGACTTGGCTCTATCTGAGAACCCTCGGAAAAGGGGAG GAGGAGTTTCCACTACGCAACGAGCAGGTACGGCAAAGAGCAGAGGAGTGTTCTCAAGCT CTCAGTATGATTCTGGACATGGATCGTGGGAAGTCAGTGAAGAATGTATTAGATCTAGAG TTTGATGTGGAACAGCTGAAGGACTCTATCGATAGGGATAAAATAGCAGTGATGGGACAT TCTTTTGGTGGAGCCACAGTTCTTCAGACCCTGAGTGAAGACCAGAGATTCAGGTGCGGT ATTGCCCTGGATGCATGGATGTTTCCAGTAGGCGATGAGGTCTATTCCCGAATTCCTCAG CCCCTCTTTTTTATCAACTCGGAACATTTCCAATATCCTTCTAACATCCTCAGAATGAAA AAATGCTACTCACCGGGGAGAGAAAGAAAAATGATTACAATCAGGGGTTCAGTTCATCAG AATTTTGTTGACTTCACTTTTGCAACCGGCAAAATAATGGGCTGCCTATTCACACTGAAA GGAGAAATAGATTCAAATGTAGCCCTTGGCCTTAGCAACAGAGCTTCCTTAGCATTCTTA CAAAAGTATTTAGGACTTCAGAAAGATTTCAATCAATGGGATGCTTTAATCGAAGGGAAA GATGACAGTCTTATTCCAGGGACCAACATTAACACCACCGACCACCATGCCACCTTGCAG AACTCTACATGAAGAGAGAAACAGAATTTAAAGAGCTTTTTAAAAATCTTGTTGAAAAAC TGTCTAAAAGTGTGTGTGTGTGATTTTAATGCATTGTCTCAAATAACTCATATTAAAAAA TGTAGGCTATGCCACAGTAGTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGTGACCGAGATCGGCAGAATCTGCCGTACTTGCAGCTAGCAAACAGCGGGCAGGGTG GACGAGCCCGGTCCGGGTTCCGGCGAGCAGCTCCCCGCGGCGCCCGGAAGGTTAAGCTGA AACGGCTGCTCAGCTTCCAAGATGTTGCCCCCCAAAATGCATGTGCTTGCCGTACTTGCA AGCTGCCTGGCGCTGGCTCAGCCTTTTGACTGGCAACGGGTTCCGGCGAGCAGCTCCCCG CGGCGCCCGGCATGGGTCAGTAAGATCCAAGCGCTGATGGCTGCTGCAGGCTTTGGCCAA ACGAAAATCCCCAGAGGAAATGGATCATACTCCGTCGGTTGTACCGACCTGATGTTTGAT TACACTCAGAAGGGCACCTTCCTGCGTTTGTATTATCCGTCCCAAGATGGTGACCCTTCT GACACCCTCTGGATCCCAGACAAAGAGTATTTTTGGGGACTTAGTAAATTTCTCGGAACA CACTGGCTTCTAGGCAAAATTCTAAGCTTATTTTTTGGTTCAATGACAACTCCTGCAGCC TGGAATTCCCCTCTGAGGACTGGTGAAAAATACCCACTCATCATTTTTTCTCATGGTCTT GGAGCATTCAGGACAATTTATTCTGCGATTGGCACTGACCTGGCATCTTACGGGTTTATA GTTGCTGCTGTAGAACACAGAGATGGATCTGCATCTGCGACTTACTTTTTCAAGGACCAA TCTGCTGCAGAAATAAGGAACAAGACTTGGCTCTATCTGAGAACCCTCGGAAAAGGGGAG GAGGAGTTTCCACTACGCAACGAGCAGGTACGGCAAAGAGCAGAGGAGTGTTCTCAAGCT CTCAGTATGATTCTGGACATGGATCGTGGGAAGTCAGTGAAGAATGTATTAGATCTAGAG TTTGATGTGGAACAGCTGAAGGACTCTATCGATAGGGATAAAATAGCAGTGATGGGACAT TCTTTTGGTGGAGCCACAGTTCTTCAGACCCTGAGTGAAGACCAGAGATTCAGGTGCGGT ATTGCCCTGGATGCATGGATGTTTCCAGTAGGCGATGAGGTCTATTCCCGAATTCCTCAG CCCCTCTTTTTTATCAACTCGGAACATTTCCAATATCCTTCTAACATCCTCAGAATGAAA AAATGCTACTCACCGGGGAGAGAAAGAAAAATGATTACAATCAGGGGTTCAGTTCATCAG AATTTTGTTGACTTCACTTTTGCAACCGGCAAAATAATGGGCTGCCTATTCACACTGAAA GGAGAAATAGATTCAAATGTAGCCCTTGGCCTTAGCAACAGAGCTTCCTTAGCATTCTTA CAAAAGTATTTAGGACTTCAGAAAGATTTCAATCAATGGGATGCTTTAATCGAAGGGAAA GATGACAGTCTTATTCCAGGGACCAACATTAACACCACCGACCACCATGCCACCTTGCAG AACTCTACATGAAGAGAGAAACAGAATTTAAAGAGCTTTTTAAAAATCTTGTTGAAAAAC TGTCTAAAAGTGTGTGTGTGTGATTTTAATGCATTGTCTCAAATAACTCATATTAAAAAA TGTAGGCTATGCCACAGTAGTGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 107-216, gnl|bosTau2|chr23 (18904776-18904885) | |
| 107-216, gnl|Hg17|chr6 (46798622-46798513) | |
| 107-216, gnl|Mm7|chr17 (41708639-41708748) | |
| 371-519, gnl|bosTau2|chr23 (18911203-18911351) | |
| 371-519, gnl|canFam2|chr12 (17882390-17882556) | |
| 371-519, gnl|echTel1|scaffold_306197 (11943-12109) | |
| 371-519, gnl|fr1|chrUn (173953282-173953454) | |
| 371-519, gnl|hg17|chr6 (46792067-46792233) | |
| 371-519, gnl|Hg17|chr6 (46792226-46792078) | |
| 371-519, gnl|mm7|chr17 (41715014-41714848) | |
| 371-519, gnl|Mm7|chr17 (41714853-41715001) | |
| 371-519, gnl|oryCun1|scaffold_200807 (105378-105544) | |
| 371-519, gnl|panTro1|chr5 (47542323-47542489) | |
| 371-519, gnl|rheMac2|chr4 (46541085-46541246) | |
| 371-519, gnl|rn3|chr9 (13072749-13072915) | |
| 371-519, gnl|tetNig1|chr14 (8856502-8856340) | |
| 806-922, gnl|bosTau2|chr23 (18917821-18917937) | |
| 806-922, gnl|canFam2|chr12 (17876898-17877035) | |
| 806-922, gnl|danRer3|chr20 (31429457-31429315) | |
| 806-922, gnl|dasNov1|scaffold_19980 (13661-13804) | |
| 806-922, gnl|echTel1|scaffold_306197 (4045-4180) | |
| 806-922, gnl|fr1|chrUn (173951259-173951390) | |
| 806-922, gnl|hg17|chr6 (46786222-46786357) | |
| 806-922, gnl|Hg17|chr6 (46786356-46786240) | |
| 806-922, gnl|mm7|chr17 (41723040-41722903) | |
| 806-922, gnl|Mm7|chr17 (41722902-41723018) | |
| 806-922, gnl|monDom2|scaffold_0 (193113229-193113095) | |
| 806-922, gnl|oryCun1|scaffold_200807 (99178-99317) | |
| 806-922, gnl|panTro1|chr5 (47536027-47536162) | |
| 806-922, gnl|rheMac2|chr4 (46535316-46535454) | |
| 806-922, gnl|rn3|chr9 (13065314-13065450) | |
| 1012-1185, gnl|bosTau2|chr23 (18920627-18920800) | |
| 1012-1185, gnl|canFam2|chr12 (17873253-17873432) | |
| 1012-1185, gnl|danRer3|chr20 (31430204-31430025) | |
| 1012-1185, gnl|dasNov1|scaffold_19980 (10771-10951) | |
| 1012-1185, gnl|echTel1|scaffold_306197 (664-844) | |
| 1012-1185, gnl|fr1|chrUn (173950869-173951049) | |
| 1012-1185, gnl|hg17|chr6 (46783682-46783861) | |
| 1012-1185, gnl|Hg17|chr6 (46783859-46783686) | |
| 1012-1185, gnl|mm7|chr17 (41727710-41727531) | |
| 1012-1185, gnl|Mm7|chr17 (41727531-41727704) | |
| 1012-1185, gnl|monDom2|scaffold_0 (193120781-193120602) | |
| 1012-1185, gnl|oryCun1|scaffold_200807 (96319-96498) | |
| 1012-1185, gnl|panTro1|chr5 (47533479-47533658) | |
| 1012-1185, gnl|rheMac2|chr4 (46532741-46532920) | |
| 1012-1185, gnl|rn3|chr9 (13060911-13061090) | |
| 1012-1185, gnl|tetNig1|chr14 (8857934-8857759) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-216, gnl|bosTau2|chr23 (18904776-18904885) | |
| 107-216, gnl|Hg17|chr6 (46798622-46798513) | |
| 107-216, gnl|Mm7|chr17 (41708639-41708748) | |
| 371-519, gnl|bosTau2|chr23 (18911203-18911351) | |
| 371-519, gnl|canFam2|chr12 (17882390-17882556) | |
| 371-519, gnl|echTel1|scaffold_306197 (11943-12109) | |
| 371-519, gnl|fr1|chrUn (173953282-173953454) | |
| 371-519, gnl|hg17|chr6 (46792067-46792233) | |
| 371-519, gnl|Hg17|chr6 (46792226-46792078) | |
| 371-519, gnl|mm7|chr17 (41715014-41714848) | |
| 371-519, gnl|Mm7|chr17 (41714853-41715001) | |
| 371-519, gnl|oryCun1|scaffold_200807 (105378-105544) | |
| 371-519, gnl|panTro1|chr5 (47542323-47542489) | |
| 371-519, gnl|rheMac2|chr4 (46541085-46541246) | |
| 371-519, gnl|rn3|chr9 (13072749-13072915) | |
| 371-519, gnl|tetNig1|chr14 (8856502-8856340) | |
| 806-922, gnl|bosTau2|chr23 (18917821-18917937) | |
| 806-922, gnl|canFam2|chr12 (17876898-17877035) | |
| 806-922, gnl|danRer3|chr20 (31429457-31429315) | |
| 806-922, gnl|dasNov1|scaffold_19980 (13661-13804) | |
| 806-922, gnl|echTel1|scaffold_306197 (4045-4180) | |
| 806-922, gnl|fr1|chrUn (173951259-173951390) | |
| 806-922, gnl|hg17|chr6 (46786222-46786357) | |
| 806-922, gnl|Hg17|chr6 (46786356-46786240) | |
| 806-922, gnl|mm7|chr17 (41723040-41722903) | |
| 806-922, gnl|Mm7|chr17 (41722902-41723018) | |
| 806-922, gnl|monDom2|scaffold_0 (193113229-193113095) | |
| 806-922, gnl|oryCun1|scaffold_200807 (99178-99317) | |
| 806-922, gnl|panTro1|chr5 (47536027-47536162) | |
| 806-922, gnl|rheMac2|chr4 (46535316-46535454) | |
| 806-922, gnl|rn3|chr9 (13065314-13065450) | |
| 1012-1185, gnl|bosTau2|chr23 (18920627-18920800) | |
| 1012-1185, gnl|canFam2|chr12 (17873253-17873432) | |
| 1012-1185, gnl|danRer3|chr20 (31430204-31430025) | |
| 1012-1185, gnl|dasNov1|scaffold_19980 (10771-10951) | |
| 1012-1185, gnl|echTel1|scaffold_306197 (664-844) | |
| 1012-1185, gnl|fr1|chrUn (173950869-173951049) | |
| 1012-1185, gnl|hg17|chr6 (46783682-46783861) | |
| 1012-1185, gnl|Hg17|chr6 (46783859-46783686) | |
| 1012-1185, gnl|mm7|chr17 (41727710-41727531) | |
| 1012-1185, gnl|Mm7|chr17 (41727531-41727704) | |
| 1012-1185, gnl|monDom2|scaffold_0 (193120781-193120602) | |
| 1012-1185, gnl|oryCun1|scaffold_200807 (96319-96498) | |
| 1012-1185, gnl|panTro1|chr5 (47533479-47533658) | |
| 1012-1185, gnl|rheMac2|chr4 (46532741-46532920) | |
| 1012-1185, gnl|rn3|chr9 (13060911-13061090) | |
| 1012-1185, gnl|tetNig1|chr14 (8857934-8857759) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| mas (0.630915) | |
| nje (0.33184) | |
| eje (0.296501) | |
| ski (0.29347) | |
| cte (0.29274) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| spc (0.226732) | |
| jej (0.197844) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.630915) | |
| nje (0.33184) | |
| eje (0.296501) | |
| ski (0.29347) | |
| cte (0.29274) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| spc (0.226732) | |
| jej (0.197844) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) | |
| ldo (0.0970026) |