Non-Coding RNA Search

Ss1.1-Ova1-OVRM10066F01.5

Sequence:


               
               AAGCGGAAAGTGTTCCCGATGGAGACTCTGAGTCAATAGAGGAGGAGAAGCTGGTGTTCA
AGTCCCCACGACGCACGTGGCTTCGCCGGAAACTCTGGTTAGTGTTCGGCCTTCACCTCT
TCACTGTCCTTAGTCCCAGTAGCCAGGATACCTGGTGGCCACAGGAGGCTGCTGAGATTG
GCCCCGAGACTGGGCTGGGCTGGGCGGTGGCCTCACTCTCCCACTGAGCAGGAAATGGGG
GTGGGGGCAGGTTCTTAAGAAAATTTTTTACCTGACTTGCTACACAAAGCTCTCTCATCA
CACAAGAAGAGAAACAGTAACCTCACTTTGAAAATTAGCTCCACTCAAGACTAGCCCACG
AATGACACCCACCTTTTCTGCACAGGACCCCTGGTCCTAAGGAGCAACCGGGGCTGCCCC
CTGAACCCGGTTTGCCATTTGCCGAGTGCAGGGATCTGGCAGTTGATCAAATAAGGCTAA
TCGCAGCACAGCGACTGTGGCCTACAGACCGGCCTCTGCAGCTGGATTTCTGTAATGGGA
GTTTTGTTAAAAGATGCTTCATAGCCGACAGGAATCAACAGAGGTGCTGGGGAACCTTCC
AGCAGCAGCCTGCTCACCCGCTGCAGGGCTGGGAGGGTGACGCCTTGGCCTCACCACCTA
TGTCTGCGCGGCCCGTAGTCCCGGCACAACTCTCTGTGTCTGCCCTCGTGCCGGTTTGGT
GAGGGAGGCAGCGTACGTCACAGGGACGGAGGTTGATCTGTCTGGACAGCGGTTTGTGGC
CGTGGCCCAGCTCGAGAAGGACTTTTGCTCAGGTGGCTGGGGTCGGGGCAGGGGATGTCA
CTCGGCGTCGCCTCTTCTGGGGCCGAGAGGAGTTGAGCAGCACAGTAGCTCTGGCAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCGGAAAGTGTTCCCGATGGAGACTCTGAGTCAATAGAGGAGGAGAAGCTGGTGTTCA
AGTCCCCACGACGCACGTGGCTTCGCCGGAAACTCTGGTTAGTGTTCGGCCTTCACCTCT
TCACTGTCCTTAGTCCCAGTAGCCAGGATACCTGGTGGCCACAGGAGGCTGCTGAGATTG
GCCCCGAGACTGGGCTGGGCTGGGCGGTGGCCTCACTCTCCCACTGAGCAGGAAATGGGG
GTGGGGGCAGGTTCTTAAGAAAATTTTTTACCTGACTTGCTACACAAAGCTCTCTCATCA
CACAAGAAGAGAAACAGTAACCTCACTTTGAAAATTAGCTCCACTCAAGACTAGCCCACG
AATGACACCCACCTTTTCTGCACAGGACCCCTGGTCCTAAGGAGCAACCGGGGCTGCCCC
CTGAACCCGGTTTGCCATTTGCCGAGTGCAGGGATCTGGCAGTTGATCAAATAAGGCTAA
TCGCAGCACAGCGACTGTGGCCTACAGACCGGCCTCTGCAGCTGGATTTCTGTAATGGGA
GTTTTGTTAAAAGATGCTTCATAGCCGACAGGAATCAACAGAGGTGCTGGGGAACCTTCC
AGCAGCAGCCTGCTCACCCGCTGCAGGGCTGGGAGGGTGACGCCTTGGCCTCACCACCTA
TGTCTGCGCGGCCCGTAGTCCCGGCACAACTCTCTGTGTCTGCCCTCGTGCCGGTTTGGT
GAGGGAGGCAGCGTACGTCACAGGGACGGAGGTTGATCTGTCTGGACAGCGGTTTGTGGC
CGTGGCCCAGCTCGAGAAGGACTTTTGCTCAGGTGGCTGGGGTCGGGGCAGGGGATGTCA
CTCGGCGTCGCCTCTTCTGGGGCCGAGAGGAGTTGAGCAGCACAGTAGCTCTGGCAGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               437-535, + strand, RNAz p=0.792532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-535, + strand, RNAz p=0.792532

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021943, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021943, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-535, gnl|bosTau2|chr23 (11638015-11637475)
               

               
               1-535, gnl|Hg17|chr6 (38228460-38229030)
               

               
               1-535, gnl|Mm7|chr17 (28399739-28400232)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr23 (11638015-11637475)
               

               
               1-535, gnl|Hg17|chr6 (38228460-38229030)
               

               
               1-535, gnl|Mm7|chr17 (28399739-28400232)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-535, gnl\|bosTau2\|chr23 (11638015-11637475)
	1-535, gnl\|Hg17\|chr6 (38228460-38229030)
	1-535, gnl\|Mm7\|chr17 (28399739-28400232)