Ss1.1-Ova1-OVRM10072H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTCGAGCCACCGCCAACTTAGGAGAGATACGTACGTCCGTGGAGTGCGCCTGCGTAGC GGTGGAAGCCGCAGGTTTTTGAAACATGAAACCTTCACTCTTCCTGACCGCCCTTTGCTT GGGAATAGCCTCAGCTGCTCCAAAACTTGATCAAAATTTAGATGCAGACTGGTACAAGTG GAAGACCTTCCGCAACTGTTCGGGCTCTTTGGGAGACTCTGATTTAGACATGATGGTAGT GGGGAGGAGAATGTAACGATGCTTACTTGGCGGCGTCCGGGAGCAGAAAGGAGTAAACTA TCAAGTCTTGCTACCTTAGAGTTTTGTATGTTTATGGTGGGAATTAATGTGGATACTTTC CCTTTTCTTTTTCCAGTTCATTATTGTAGATGAATTAGAATGCTGTTGTCTTTTGTATGT TGCTCTTATTTTCCAGTAACTACTGAACTGCTGACTCTGTAGATAAACTCCAATAGTTTC TCTCTCCTCCCTCAATCCCTACCTCCTTTTCTTCCCTCTTTTTCATTTTCTCTTTCTCTC TTTGAATACAGGTCATTTTATGCAGCGCAGGAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTCGAGCCACCGCCAACTTAGGAGAGATACGTACGTCCGTGGAGTGCGCCTGCGTAGC GGTGGAAGCCGCAGGTTTTTGAAACATGAAACCTTCACTCTTCCTGACCGCCCTTTGCTT GGGAATAGCCTCAGCTGCTCCAAAACTTGATCAAAATTTAGATGCAGACTGGTACAAGTG GAAGACCTTCCGCAACTGTTCGGGCTCTTTGGGAGACTCTGATTTAGACATGATGGTAGT GGGGAGGAGAATGTAACGATGCTTACTTGGCGGCGTCCGGGAGCAGAAAGGAGTAAACTA TCAAGTCTTGCTACCTTAGAGTTTTGTATGTTTATGGTGGGAATTAATGTGGATACTTTC CCTTTTCTTTTTCCAGTTCATTATTGTAGATGAATTAGAATGCTGTTGTCTTTTGTATGT TGCTCTTATTTTCCAGTAACTACTGAACTGCTGACTCTGTAGATAAACTCCAATAGTTTC TCTCTCCTCCCTCAATCCCTACCTCCTTTTCTTCCCTCTTTTTCATTTTCTCTTTCTCTC TTTGAATACAGGTCATTTTATGCAGCGCAGGAAAAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 73-184, - strand, RNAz p=0.948722 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-184, - strand, RNAz p=0.948722 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001333, - |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 73-184, gnl|bosTau2|chr8 (47002153-47002264) | |
| 73-184, gnl|canFam2|chr1 (72995801-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995803-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995678-72995809) | |
| 73-184, gnl|canFam2|chr1 (72995809-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995812-72995658) | |
| 73-184, gnl|canFam2|chr1 (72995607-72995786) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710515-43710643) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710501) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6415-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6417-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6290-6423) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6423-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6426-6270) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6220-6398) | |
| 73-184, gnl|echTel1|scaffold_12356 (1851-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1853-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1726-1859) | |
| 73-184, gnl|echTel1|scaffold_12356 (1859-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1862-1706) | |
| 73-184, gnl|echTel1|scaffold_163053 (1816-2014) | |
| 73-184, gnl|fr1|chrUn (64254751-64254606) | |
| 73-184, gnl|hg17|chr10 (46211376-46211501) | |
| 73-184, gnl|hg17|chr10 (48601134-48601261) | |
| 73-184, gnl|hg17|chr10 (47777067-47777200) | |
| 73-184, gnl|hg17|chr10 (46692188-46692321) | |
| 73-184, gnl|hg17|chr9 (96879726-96879882) | |
| 73-184, gnl|hg17|chr9 (87616872-87617038) | |
| 73-184, gnl|Hg17|chr9 (87688610-87688710) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20691-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20693-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20566-20699) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20699-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20702-20546) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20493-20674) | |
| 73-184, gnl|mm7|chr13 (59964081-59964198) | |
| 73-184, gnl|mm7|chr13 (59964081-59964198) | |
| 73-184, gnl|mm7|chr13 (59964198-59964067) | |
| 73-184, gnl|mm7|chr13 (59964067-59964198) | |
| 73-184, gnl|mm7|chr13 (62197294-62197449) | |
| 73-184, gnl|mm7|chr13 (59910834-59910656) | |
| 73-184, gnl|Mm7|chr13 (62197460-62197349) | |
| 73-184, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 73-184, gnl|monDom2|scaffold_83 (2509583-2509708) | |
| 73-184, gnl|monDom2|scaffold_83 (2401145-2401037) | |
| 73-184, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 73-184, gnl|monDom2|scaffold_83 (2257239-2257367) | |
| 73-184, gnl|monDom2|scaffold_83 (2401203-2401037) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3885-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3883-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (4009-3877) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3877-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3876-4029) | |
| 73-184, gnl|oryCun1|scaffold_184365 (4080-3901) | |
| 73-184, gnl|panTro1|chr11 (81093784-81093940) | |
| 73-184, gnl|panTro1|chr11 (71662197-71662375) | |
| 73-184, gnl|panTro1|chr8 (90818585-90818710) | |
| 73-184, gnl|panTro1|chr8 (90818583-90818710) | |
| 73-184, gnl|panTro1|chr8 (90818710-90818577) | |
| 73-184, gnl|panTro1|chr8 (90818577-90818710) | |
| 73-184, gnl|rheMac2|chr15 (96309242-96309127) | |
| 73-184, gnl|rheMac2|chr15 (96309244-96309127) | |
| 73-184, gnl|rheMac2|chr15 (96309127-96309250) | |
| 73-184, gnl|rheMac2|chr15 (96309250-96309127) | |
| 73-184, gnl|rheMac2|chr15 (108654864-108655020) | |
| 73-184, gnl|rheMac2|chr15 (96309057-96309225) | |
| 73-184, gnl|rn3|chr17 (9513592-9513470) | |
| 73-184, gnl|rn3|chr17 (9513594-9513470) | |
| 73-184, gnl|rn3|chr17 (9513470-9513598) | |
| 73-184, gnl|rn3|chr17 (9513598-9513470) | |
| 73-184, gnl|rn3|chr17 (6289134-6288979) | |
| 73-184, gnl|rn3|chr17 (9576405-9576584) | |
| 73-184, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559608-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559476-559589) | |
| 73-184, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559619-559456) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-184, gnl|bosTau2|chr8 (47002153-47002264) | |
| 73-184, gnl|canFam2|chr1 (72995801-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995803-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995678-72995809) | |
| 73-184, gnl|canFam2|chr1 (72995809-72995678) | |
| 73-184, gnl|canFam2|chr1 (72995812-72995658) | |
| 73-184, gnl|canFam2|chr1 (72995607-72995786) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710515-43710643) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710515) | |
| 73-184, gnl|danRer3|chr5 (43710643-43710501) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6415-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6417-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6290-6423) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6423-6290) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6426-6270) | |
| 73-184, gnl|dasNov1|scaffold_18578 (6220-6398) | |
| 73-184, gnl|echTel1|scaffold_12356 (1851-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1853-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1726-1859) | |
| 73-184, gnl|echTel1|scaffold_12356 (1859-1726) | |
| 73-184, gnl|echTel1|scaffold_12356 (1862-1706) | |
| 73-184, gnl|echTel1|scaffold_163053 (1816-2014) | |
| 73-184, gnl|fr1|chrUn (64254751-64254606) | |
| 73-184, gnl|hg17|chr10 (46211376-46211501) | |
| 73-184, gnl|hg17|chr10 (48601134-48601261) | |
| 73-184, gnl|hg17|chr10 (47777067-47777200) | |
| 73-184, gnl|hg17|chr10 (46692188-46692321) | |
| 73-184, gnl|hg17|chr9 (96879726-96879882) | |
| 73-184, gnl|hg17|chr9 (87616872-87617038) | |
| 73-184, gnl|Hg17|chr9 (87688610-87688710) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20691-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20693-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20566-20699) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20699-20566) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20702-20546) | |
| 73-184, gnl|loxAfr1|scaffold_22413 (20493-20674) | |
| 73-184, gnl|mm7|chr13 (59964081-59964198) | |
| 73-184, gnl|mm7|chr13 (59964081-59964198) | |
| 73-184, gnl|mm7|chr13 (59964198-59964067) | |
| 73-184, gnl|mm7|chr13 (59964067-59964198) | |
| 73-184, gnl|mm7|chr13 (62197294-62197449) | |
| 73-184, gnl|mm7|chr13 (59910834-59910656) | |
| 73-184, gnl|Mm7|chr13 (62197460-62197349) | |
| 73-184, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 73-184, gnl|monDom2|scaffold_83 (2509583-2509708) | |
| 73-184, gnl|monDom2|scaffold_83 (2401145-2401037) | |
| 73-184, gnl|monDom2|scaffold_83 (2401037-2401145) | |
| 73-184, gnl|monDom2|scaffold_83 (2257239-2257367) | |
| 73-184, gnl|monDom2|scaffold_83 (2401203-2401037) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3885-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3883-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (4009-3877) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3877-4009) | |
| 73-184, gnl|oryCun1|scaffold_184365 (3876-4029) | |
| 73-184, gnl|oryCun1|scaffold_184365 (4080-3901) | |
| 73-184, gnl|panTro1|chr11 (81093784-81093940) | |
| 73-184, gnl|panTro1|chr11 (71662197-71662375) | |
| 73-184, gnl|panTro1|chr8 (90818585-90818710) | |
| 73-184, gnl|panTro1|chr8 (90818583-90818710) | |
| 73-184, gnl|panTro1|chr8 (90818710-90818577) | |
| 73-184, gnl|panTro1|chr8 (90818577-90818710) | |
| 73-184, gnl|rheMac2|chr15 (96309242-96309127) | |
| 73-184, gnl|rheMac2|chr15 (96309244-96309127) | |
| 73-184, gnl|rheMac2|chr15 (96309127-96309250) | |
| 73-184, gnl|rheMac2|chr15 (96309250-96309127) | |
| 73-184, gnl|rheMac2|chr15 (108654864-108655020) | |
| 73-184, gnl|rheMac2|chr15 (96309057-96309225) | |
| 73-184, gnl|rn3|chr17 (9513592-9513470) | |
| 73-184, gnl|rn3|chr17 (9513594-9513470) | |
| 73-184, gnl|rn3|chr17 (9513470-9513598) | |
| 73-184, gnl|rn3|chr17 (9513598-9513470) | |
| 73-184, gnl|rn3|chr17 (6289134-6288979) | |
| 73-184, gnl|rn3|chr17 (9576405-9576584) | |
| 73-184, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559608-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559476-559589) | |
| 73-184, gnl|xenTro1|scaffold_528 (559589-559476) | |
| 73-184, gnl|xenTro1|scaffold_528 (559619-559456) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) |