Non-Coding RNA Search

Ss1.1-Ova1-OVRM10073G04.5.5

Sequence:


               
               CTGAATTCCTTTGAATTTTTCCCACGCGTCCGCGGACGCGTGGGCCGTGCAGTGTATGGG
CTATGAGCCTTTCTTAGAACATGTTGGGTCACTTAACAGCAGCTGTGCTGGAGAGATATT
TGATCTGAGAAGACTTTTTGAATCTTCTGGGCCCTAACACCATTCTGGTTTTGCCGCGGA
GGACCCTAGGCGGGGGTCGGGGCGGGGTCCTGGAGGAGGCCCGGGCAGGCGGCAGACCGG
GCTGAGTCGTGTGGGACGTGGGCTCCCGGTTCCTCTTCGCTCGCCGCTGGGGGCGGGAGC
CCAGGCGTCCTCTCTAGCCTCGCAGGCGGCTCACCAGCAACAGGAGCAAAGTTGAGGAAA
CGCCGGGCCCTAACGCCTCGCCCCGCCCTCTTCCTCCCGGCGGGCGGCGGGGGCGGGGCC
GCGTGGTTGCCCTGGCGACACGCAGTGTTTGTGCTCCAAGGAGTCCTCGCGCGCTGCCAT
GGCTAGCCAGCGGCTTTCGGTCCCCTGCAGCTCGCAGTTGCCGCCCGAGCAGCCGCTGCA
GGTGAAGGTGGTGGGGCTCTTCAAAAGCTCTAGCTTTCAAGTTGCGAAGAGCACCGCTGA
GGTAACCGCGAAGAAACCGCAAGTGTGGGCGGCCGGTCCGGCTTCTGTGTCTAGCGCCTT
CTTGTGGCGGGGCTTCAGGATCGGGGAGGGGAGGTTCTGGCTGATGTGGACAGGAGCGAG
CAAAGGCAGGTGCGGGTACTGGCGGGAGTTCCACCTCGAGAAGGGCTACCTTTAAAGGGA
CATCGGAGCGAAGGAAGCGTTCAGGACCTTGCTGTGAATAAAGGTGATTCCTTCCTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAATTCCTTTGAATTTTTCCCACGCGTCCGCGGACGCGTGGGCCGTGCAGTGTATGGG
CTATGAGCCTTTCTTAGAACATGTTGGGTCACTTAACAGCAGCTGTGCTGGAGAGATATT
TGATCTGAGAAGACTTTTTGAATCTTCTGGGCCCTAACACCATTCTGGTTTTGCCGCGGA
GGACCCTAGGCGGGGGTCGGGGCGGGGTCCTGGAGGAGGCCCGGGCAGGCGGCAGACCGG
GCTGAGTCGTGTGGGACGTGGGCTCCCGGTTCCTCTTCGCTCGCCGCTGGGGGCGGGAGC
CCAGGCGTCCTCTCTAGCCTCGCAGGCGGCTCACCAGCAACAGGAGCAAAGTTGAGGAAA
CGCCGGGCCCTAACGCCTCGCCCCGCCCTCTTCCTCCCGGCGGGCGGCGGGGGCGGGGCC
GCGTGGTTGCCCTGGCGACACGCAGTGTTTGTGCTCCAAGGAGTCCTCGCGCGCTGCCAT
GGCTAGCCAGCGGCTTTCGGTCCCCTGCAGCTCGCAGTTGCCGCCCGAGCAGCCGCTGCA
GGTGAAGGTGGTGGGGCTCTTCAAAAGCTCTAGCTTTCAAGTTGCGAAGAGCACCGCTGA
GGTAACCGCGAAGAAACCGCAAGTGTGGGCGGCCGGTCCGGCTTCTGTGTCTAGCGCCTT
CTTGTGGCGGGGCTTCAGGATCGGGGAGGGGAGGTTCTGGCTGATGTGGACAGGAGCGAG
CAAAGGCAGGTGCGGGTACTGGCGGGAGTTCCACCTCGAGAAGGGCTACCTTTAAAGGGA
CATCGGAGCGAAGGAAGCGTTCAGGACCTTGCTGTGAATAAAGGTGATTCCTTCCTCTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               48-173, - strand, RNAz p=0.99008
               

               
               66-173, + strand, RNAz p=0.991449

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-173, - strand, RNAz p=0.99008
               

               
               66-173, + strand, RNAz p=0.991449

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               48-173, gnl|bosTau2|chr24 (34957903-34958027)
               

               
               48-173, gnl|canFam2|chr1 (23353132-23352850)
               

               
               48-173, gnl|dasNov1|scaffold_203 (111465-111748)
               

               
               48-173, gnl|hg17|chr18 (51116450-51116736)
               

               
               48-173, gnl|Hg17|chr18 (51116688-51116562)
               

               
               48-173, gnl|mm7|chr18 (70008783-70008510)
               

               
               48-173, gnl|Mm7|chr18 (70008557-70008671)
               

               
               48-173, gnl|monDom2|scaffold_20 (47954660-47954352)
               

               
               48-173, gnl|oryCun1|scaffold_202185 (78129-77844)
               

               
               48-173, gnl|panTro1|chr17 (47745628-47745914)
               

               
               48-173, gnl|rheMac2|chr18 (48571903-48572189)
               

               
               48-173, gnl|rn3|chr18 (66365321-66365060)
               


               
               199-839, gnl|bosTau2|chr9 (23071102-23070432)
               

               
               199-839, gnl|Hg17|chr6 (109868714-109868061)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-173, gnl|bosTau2|chr24 (34957903-34958027)
               

               
               48-173, gnl|canFam2|chr1 (23353132-23352850)
               

               
               48-173, gnl|dasNov1|scaffold_203 (111465-111748)
               

               
               48-173, gnl|hg17|chr18 (51116450-51116736)
               

               
               48-173, gnl|Hg17|chr18 (51116688-51116562)
               

               
               48-173, gnl|mm7|chr18 (70008783-70008510)
               

               
               48-173, gnl|Mm7|chr18 (70008557-70008671)
               

               
               48-173, gnl|monDom2|scaffold_20 (47954660-47954352)
               

               
               48-173, gnl|oryCun1|scaffold_202185 (78129-77844)
               

               
               48-173, gnl|panTro1|chr17 (47745628-47745914)
               

               
               48-173, gnl|rheMac2|chr18 (48571903-48572189)
               

               
               48-173, gnl|rn3|chr18 (66365321-66365060)
               


               
               199-839, gnl|bosTau2|chr9 (23071102-23070432)
               

               
               199-839, gnl|Hg17|chr6 (109868714-109868061)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cty (0.10408)

	48-173, - strand, RNAz p=0.99008
	66-173, + strand, RNAz p=0.991449

	48-173, gnl\|bosTau2\|chr24 (34957903-34958027)
	48-173, gnl\|canFam2\|chr1 (23353132-23352850)
	48-173, gnl\|dasNov1\|scaffold_203 (111465-111748)
	48-173, gnl\|hg17\|chr18 (51116450-51116736)
	48-173, gnl\|Hg17\|chr18 (51116688-51116562)
	48-173, gnl\|mm7\|chr18 (70008783-70008510)
	48-173, gnl\|Mm7\|chr18 (70008557-70008671)
	48-173, gnl\|monDom2\|scaffold_20 (47954660-47954352)
	48-173, gnl\|oryCun1\|scaffold_202185 (78129-77844)
	48-173, gnl\|panTro1\|chr17 (47745628-47745914)
	48-173, gnl\|rheMac2\|chr18 (48571903-48572189)
	48-173, gnl\|rn3\|chr18 (66365321-66365060)

	199-839, gnl\|bosTau2\|chr9 (23071102-23070432)
	199-839, gnl\|Hg17\|chr6 (109868714-109868061)