Ss1.1-Ova1-OVRM10075A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCCTGGGCTTCATGGCCACAGAGCAGGGCGTGCACATCTCCAAGGTGGCCGAGTCAGG GCCTGGTCTGGCTTTCATCGCCTACCCCAGGGCTGTCACACTGATGCCTGTGGCCCCGCT CTGGGCTGCCCTGTTCTTCTTCATGCTGCTGCTGCTCGGCCTCGACAGCCAGTTCGTAGG TGTGGAAGGCTTCATCACCGGCCTGCTGGACCTCCTCCCGGCCTCCTACTACTTCCGTTT CCAGAGGGAGGTCTCCGTGGCCCTCTGCTGCGCCCTCTGCTTTGTCATCGACCTCTCCAT GGTGACCGATGGTGGGATGTATGTCTTCCAGCTGTTCGACTACTACTCGGCCAGCGGCAC GACCCTGCTCTGGCAGGCCTTCTGGGAGTGCGTGGTGGTCGCCTGGGTGTACGGGGCCGA CCGCTTCATGGACGACGTGGCCTGCATGATCGGGTACCGACCCTGCCCCTGGATGAAATG GTGCTGGTCTTTCTTCACCCCGCTGGTGTGCATGGGCATCTTCATCTTCAACGTCGTGTA CTACGAGCCGCTCGTCTACAACAACACCTACGTGTACCCGTGGTGGGGCGAAGCCGTGGG CTGGGGCTTCGCGCTCTCCTCCATGCTGTGTGTGCCCCTCCACCTCCTGGGCTGCCTCCT CAGGGCCAAGGGGACCGTGGCTGAGCGCTGGCAGCACCTGACGCAGCCTATCTGGGGCCT CCACCACTTGGAATACAGAGCTCAGGACTCGGATGTCAGGGGCCTGACCACCCTGACCCC AGTGTCCGAGAGCAGCAAGGTGGTGGTGGTGGAGAGCGTCATGTGACAGGCACCCCGGCT CACATCACCAGCTCACCCTCTTGTAGCCATAGCAGCCCCTGCTTCAGCCCCCCCACCCCT CCAGGGGGCTTGCCTTTCCCTGACACGGGGTCTGCCTGGGGTGGGGGGAGGGGAGGAAGC ACCAGAGTGCTTATAACTAAAATAACTTTTTCCATTTTTAATAAAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCCTGGGCTTCATGGCCACAGAGCAGGGCGTGCACATCTCCAAGGTGGCCGAGTCAGG GCCTGGTCTGGCTTTCATCGCCTACCCCAGGGCTGTCACACTGATGCCTGTGGCCCCGCT CTGGGCTGCCCTGTTCTTCTTCATGCTGCTGCTGCTCGGCCTCGACAGCCAGTTCGTAGG TGTGGAAGGCTTCATCACCGGCCTGCTGGACCTCCTCCCGGCCTCCTACTACTTCCGTTT CCAGAGGGAGGTCTCCGTGGCCCTCTGCTGCGCCCTCTGCTTTGTCATCGACCTCTCCAT GGTGACCGATGGTGGGATGTATGTCTTCCAGCTGTTCGACTACTACTCGGCCAGCGGCAC GACCCTGCTCTGGCAGGCCTTCTGGGAGTGCGTGGTGGTCGCCTGGGTGTACGGGGCCGA CCGCTTCATGGACGACGTGGCCTGCATGATCGGGTACCGACCCTGCCCCTGGATGAAATG GTGCTGGTCTTTCTTCACCCCGCTGGTGTGCATGGGCATCTTCATCTTCAACGTCGTGTA CTACGAGCCGCTCGTCTACAACAACACCTACGTGTACCCGTGGTGGGGCGAAGCCGTGGG CTGGGGCTTCGCGCTCTCCTCCATGCTGTGTGTGCCCCTCCACCTCCTGGGCTGCCTCCT CAGGGCCAAGGGGACCGTGGCTGAGCGCTGGCAGCACCTGACGCAGCCTATCTGGGGCCT CCACCACTTGGAATACAGAGCTCAGGACTCGGATGTCAGGGGCCTGACCACCCTGACCCC AGTGTCCGAGAGCAGCAAGGTGGTGGTGGTGGAGAGCGTCATGTGACAGGCACCCCGGCT CACATCACCAGCTCACCCTCTTGTAGCCATAGCAGCCCCTGCTTCAGCCCCCCCACCCCT CCAGGGGGCTTGCCTTTCCCTGACACGGGGTCTGCCTGGGGTGGGGGGAGGGGAGGAAGC ACCAGAGTGCTTATAACTAAAATAACTTTTTCCATTTTTAATAAAACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 842-989, + strand, RNAz p=0.999991 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 842-989, + strand, RNAz p=0.999991 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 170-311, gnl|bosTau2|chrX (13581480-13581339) | |
| 170-311, gnl|Hg17|chrX (152480429-152480570) | |
| 170-311, gnl|Mm7|chrX (69066565-69066706) | |
| 413-515, gnl|bosTau2|chrX (13581063-13580961) | |
| 413-515, gnl|canFam2|chrX (124552902-124552795) | |
| 413-515, gnl|canFam2|chrX (124552793-124552903) | |
| 413-515, gnl|danRer3|chr8 (3046509-3046396) | |
| 413-515, gnl|danRer3|chr8 (3046397-3046510) | |
| 413-515, gnl|dasNov1|scaffold_16320 (9746-9854) | |
| 413-515, gnl|dasNov1|scaffold_16320 (9854-9745) | |
| 413-515, gnl|echTel1|scaffold_301941 (3571-3460) | |
| 413-515, gnl|echTel1|scaffold_301941 (3459-3572) | |
| 413-515, gnl|fr1|chrUn (52655183-52655073) | |
| 413-515, gnl|fr1|chrUn (31715632-31715519) | |
| 413-515, gnl|galGal2|chr12 (11026828-11026720) | |
| 413-515, gnl|galGal2|chr12 (11026721-11026829) | |
| 413-515, gnl|hg17|chr16 (32798250-32798363) | |
| 413-515, gnl|hg17|chrX (152480828-152480941) | |
| 413-515, gnl|Hg17|chrX (152480834-152480936) | |
| 413-515, gnl|loxAfr1|scaffold_40115 (2197-2303) | |
| 413-515, gnl|loxAfr1|scaffold_40115 (2309-2196) | |
| 413-515, gnl|mm7|chrX (69067086-69066968) | |
| 413-515, gnl|mm7|chrX (69066974-69067086) | |
| 413-515, gnl|Mm7|chrX (69066980-69067082) | |
| 413-515, gnl|monDom2|scaffold_178 (1173778-1173667) | |
| 413-515, gnl|monDom2|scaffold_178 (1173656-1173779) | |
| 413-515, gnl|oryCun1|scaffold_213524 (21758-21845) | |
| 413-515, gnl|oryCun1|scaffold_213524 (21847-21758) | |
| 413-515, gnl|panTro1|chr18 (34728874-34728987) | |
| 413-515, gnl|panTro1|chrX_random (29288767-29288880) | |
| 413-515, gnl|rheMac2|chrX (151803318-151803206) | |
| 413-515, gnl|rheMac2|chrX (151803207-151803319) | |
| 413-515, gnl|rn3|chrX (159652396-159652284) | |
| 413-515, gnl|rn3|chrX (159652284-159652396) | |
| 413-515, gnl|tetNig1|chr11 (3714939-3715052) | |
| 413-515, gnl|tetNig1|chr9 (5320117-5320009) | |
| 413-515, gnl|xenTro1|scaffold_82 (1261260-1261147) | |
| 413-515, gnl|xenTro1|scaffold_82 (1261152-1261261) | |
| 684-1007, gnl|bosTau2|chrX (13580129-13579803) | |
| 684-1007, gnl|Mm7|chrX (69067607-69067883) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-311, gnl|bosTau2|chrX (13581480-13581339) | |
| 170-311, gnl|Hg17|chrX (152480429-152480570) | |
| 170-311, gnl|Mm7|chrX (69066565-69066706) | |
| 413-515, gnl|bosTau2|chrX (13581063-13580961) | |
| 413-515, gnl|canFam2|chrX (124552902-124552795) | |
| 413-515, gnl|canFam2|chrX (124552793-124552903) | |
| 413-515, gnl|danRer3|chr8 (3046509-3046396) | |
| 413-515, gnl|danRer3|chr8 (3046397-3046510) | |
| 413-515, gnl|dasNov1|scaffold_16320 (9746-9854) | |
| 413-515, gnl|dasNov1|scaffold_16320 (9854-9745) | |
| 413-515, gnl|echTel1|scaffold_301941 (3571-3460) | |
| 413-515, gnl|echTel1|scaffold_301941 (3459-3572) | |
| 413-515, gnl|fr1|chrUn (52655183-52655073) | |
| 413-515, gnl|fr1|chrUn (31715632-31715519) | |
| 413-515, gnl|galGal2|chr12 (11026828-11026720) | |
| 413-515, gnl|galGal2|chr12 (11026721-11026829) | |
| 413-515, gnl|hg17|chr16 (32798250-32798363) | |
| 413-515, gnl|hg17|chrX (152480828-152480941) | |
| 413-515, gnl|Hg17|chrX (152480834-152480936) | |
| 413-515, gnl|loxAfr1|scaffold_40115 (2197-2303) | |
| 413-515, gnl|loxAfr1|scaffold_40115 (2309-2196) | |
| 413-515, gnl|mm7|chrX (69067086-69066968) | |
| 413-515, gnl|mm7|chrX (69066974-69067086) | |
| 413-515, gnl|Mm7|chrX (69066980-69067082) | |
| 413-515, gnl|monDom2|scaffold_178 (1173778-1173667) | |
| 413-515, gnl|monDom2|scaffold_178 (1173656-1173779) | |
| 413-515, gnl|oryCun1|scaffold_213524 (21758-21845) | |
| 413-515, gnl|oryCun1|scaffold_213524 (21847-21758) | |
| 413-515, gnl|panTro1|chr18 (34728874-34728987) | |
| 413-515, gnl|panTro1|chrX_random (29288767-29288880) | |
| 413-515, gnl|rheMac2|chrX (151803318-151803206) | |
| 413-515, gnl|rheMac2|chrX (151803207-151803319) | |
| 413-515, gnl|rn3|chrX (159652396-159652284) | |
| 413-515, gnl|rn3|chrX (159652284-159652396) | |
| 413-515, gnl|tetNig1|chr11 (3714939-3715052) | |
| 413-515, gnl|tetNig1|chr9 (5320117-5320009) | |
| 413-515, gnl|xenTro1|scaffold_82 (1261260-1261147) | |
| 413-515, gnl|xenTro1|scaffold_82 (1261152-1261261) | |
| 684-1007, gnl|bosTau2|chrX (13580129-13579803) | |
| 684-1007, gnl|Mm7|chrX (69067607-69067883) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nje (0.33184) | |
| jej (0.197844) | |
| cov (0.132153) | |
| eep (0.122564) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| jej (0.197844) | |
| cov (0.132153) | |
| eep (0.122564) | |
| jca (0.11396) | |
| eje (0.0988338) |