Ss1.1-Ova1-OVRM10075D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCCGCCTCCTCCCTTCTCTCCTCCCTTCCCTGCAAAGCACAACCTGCAGCCCAGGGGC GCCGGGCTGAGCCCCTTTGATCTCGTCGTTGTCATCGTGTGTTTTGTACGTTGGGATTGG TCAGTTCGGCGGTGACGTGGGCGGCCCCGCCCCCTCGGTACCTCGGGCAGGTGGGCTCGG CGTCCAGAGAGGGCCTGGGGGCCTGGACGGAGCGAAAGATGGAGCCAGTGCTCTGGGGCA AGTGTGGCCCCGAGCGGGGAGGGCTTCAGGGCAGGAGGGGCTGCTCTCCATTACAGAGGG GGCCCCCGGGGGCCCCGACGGCGCGGGGCAGGCAGGGCGGGTCCCTCTCAGCCCGGCCAT TGCCGGCGCTGGGGGGGCCTGGGGCGTCGTGTGGCTGCGGGCCAGGGGCCTTGGGCTCCT GCCTGAGGCGTTGCACTGAACAAGACCAAATCACTGGTTGTGAGCGTCCGTGAAGGGTGT GTCCAGTGTCCTGCAGTGGGTCCCCTGTCACTGTTTACATGACCTATTTGTGTGGTTACA TAGCCCTTTATTTAAGAGAGAGAAGTTCCTTTTACGAAGTTATTAAATTATATGTTTAAA AGCTACAGAAGAAAAAAAGCTGCAGAGTATTTATAAAATTGTCTTTTTAAAAAAAAAAAA AAATCAAGCCAGAACGTTTGACCATAGGCACGGAAAAGGGAAGAAAGCATAATAGAAACT TTGCTAGTTTAGAAAAAAGAGAAAAAAAATCAACAAAAAAAAGTCCCTTTCTTGTAAACT TACGGACAAGTCTTTGTGGCTGTTGGAGTTTAGTTTTTATATACACAGAGTTATCAGACG TTATTTATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCCGCCTCCTCCCTTCTCTCCTCCCTTCCCTGCAAAGCACAACCTGCAGCCCAGGGGC GCCGGGCTGAGCCCCTTTGATCTCGTCGTTGTCATCGTGTGTTTTGTACGTTGGGATTGG TCAGTTCGGCGGTGACGTGGGCGGCCCCGCCCCCTCGGTACCTCGGGCAGGTGGGCTCGG CGTCCAGAGAGGGCCTGGGGGCCTGGACGGAGCGAAAGATGGAGCCAGTGCTCTGGGGCA AGTGTGGCCCCGAGCGGGGAGGGCTTCAGGGCAGGAGGGGCTGCTCTCCATTACAGAGGG GGCCCCCGGGGGCCCCGACGGCGCGGGGCAGGCAGGGCGGGTCCCTCTCAGCCCGGCCAT TGCCGGCGCTGGGGGGGCCTGGGGCGTCGTGTGGCTGCGGGCCAGGGGCCTTGGGCTCCT GCCTGAGGCGTTGCACTGAACAAGACCAAATCACTGGTTGTGAGCGTCCGTGAAGGGTGT GTCCAGTGTCCTGCAGTGGGTCCCCTGTCACTGTTTACATGACCTATTTGTGTGGTTACA TAGCCCTTTATTTAAGAGAGAGAAGTTCCTTTTACGAAGTTATTAAATTATATGTTTAAA AGCTACAGAAGAAAAAAAGCTGCAGAGTATTTATAAAATTGTCTTTTTAAAAAAAAAAAA AAATCAAGCCAGAACGTTTGACCATAGGCACGGAAAAGGGAAGAAAGCATAATAGAAACT TTGCTAGTTTAGAAAAAAGAGAAAAAAAATCAACAAAAAAAAGTCCCTTTCTTGTAAACT TACGGACAAGTCTTTGTGGCTGTTGGAGTTTAGTTTTTATATACACAGAGTTATCAGACG TTATTTATAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 611-724, + strand, RNAz p=0.9897 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 611-724, + strand, RNAz p=0.9897 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 9-358, gnl|bosTau2|chr19 (45441551-45441198) | |
| 9-358, gnl|canFam2|chr9 (3373491-3372898) | |
| 9-358, gnl|echTel1|scaffold_299303 (8420-8829) | |
| 9-358, gnl|galGal2|chr3_random (680152-680900) | |
| 9-358, gnl|hg17|chr17 (77473049-77473649) | |
| 9-358, gnl|Hg17|chr17 (77473669-77473305) | |
| 9-358, gnl|loxAfr1|scaffold_152526 (4390-3843) | |
| 9-358, gnl|mm7|chr11 (120737676-120738207) | |
| 9-358, gnl|Mm7|chr11 (120738230-120737913) | |
| 9-358, gnl|monDom2|scaffold_18 (14896161-14896852) | |
| 9-358, gnl|oryCun1|scaffold_108698 (4820-5308) | |
| 9-358, gnl|panTro1|chr19 (81237853-81238453) | |
| 9-358, gnl|rheMac2|chr16 (77352199-77352798) | |
| 9-358, gnl|rn3|chr10 (110034537-110035066) | |
| 365-852, gnl|bosTau2|chr19 (45441138-45440671) | |
| 365-852, gnl|canFam2|chr9 (3373219-3373590) | |
| 365-852, gnl|echTel1|scaffold_299303 (8682-8315) | |
| 365-852, gnl|galGal2|chr3_random (680360-680050) | |
| 365-852, gnl|Hg17|chr17 (77473236-77472759) | |
| 365-852, gnl|hg17|chr17_random (1181748-1182110) | |
| 365-852, gnl|loxAfr1|scaffold_152526 (4154-4495) | |
| 365-852, gnl|mm7|chr11 (120737911-120737575) | |
| 365-852, gnl|Mm7|chr11 (120737838-120737408) | |
| 365-852, gnl|monDom2|scaffold_18 (14896457-14896060) | |
| 365-852, gnl|oryCun1|scaffold_108698 (5002-4721) | |
| 365-852, gnl|panTro1|chr19 (81238112-81237749) | |
| 365-852, gnl|rheMac2|chr16 (77352457-77352091) | |
| 365-852, gnl|rn3|chr10 (110034775-110034438) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-358, gnl|bosTau2|chr19 (45441551-45441198) | |
| 9-358, gnl|canFam2|chr9 (3373491-3372898) | |
| 9-358, gnl|echTel1|scaffold_299303 (8420-8829) | |
| 9-358, gnl|galGal2|chr3_random (680152-680900) | |
| 9-358, gnl|hg17|chr17 (77473049-77473649) | |
| 9-358, gnl|Hg17|chr17 (77473669-77473305) | |
| 9-358, gnl|loxAfr1|scaffold_152526 (4390-3843) | |
| 9-358, gnl|mm7|chr11 (120737676-120738207) | |
| 9-358, gnl|Mm7|chr11 (120738230-120737913) | |
| 9-358, gnl|monDom2|scaffold_18 (14896161-14896852) | |
| 9-358, gnl|oryCun1|scaffold_108698 (4820-5308) | |
| 9-358, gnl|panTro1|chr19 (81237853-81238453) | |
| 9-358, gnl|rheMac2|chr16 (77352199-77352798) | |
| 9-358, gnl|rn3|chr10 (110034537-110035066) | |
| 365-852, gnl|bosTau2|chr19 (45441138-45440671) | |
| 365-852, gnl|canFam2|chr9 (3373219-3373590) | |
| 365-852, gnl|echTel1|scaffold_299303 (8682-8315) | |
| 365-852, gnl|galGal2|chr3_random (680360-680050) | |
| 365-852, gnl|Hg17|chr17 (77473236-77472759) | |
| 365-852, gnl|hg17|chr17_random (1181748-1182110) | |
| 365-852, gnl|loxAfr1|scaffold_152526 (4154-4495) | |
| 365-852, gnl|mm7|chr11 (120737911-120737575) | |
| 365-852, gnl|Mm7|chr11 (120737838-120737408) | |
| 365-852, gnl|monDom2|scaffold_18 (14896457-14896060) | |
| 365-852, gnl|oryCun1|scaffold_108698 (5002-4721) | |
| 365-852, gnl|panTro1|chr19 (81238112-81237749) | |
| 365-852, gnl|rheMac2|chr16 (77352457-77352091) | |
| 365-852, gnl|rn3|chr10 (110034775-110034438) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| aor (0.195274) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cje (0.165235) | |
| csk (0.140746) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cje (0.165235) | |
| csk (0.140746) | |
| cly (0.120642) | |
| nbm (0.0993246) |