Ss1.1-Ova1-OVRM10075F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCCTACATGGACAAAGCCAGCTACCCAGCGGAGCAGGAGGTCCTCATTGATGAGCAGC TGCACTCTCCAGAGGGCCTGGCGGTGGACTGGGTCCACAGGCACATCTATTGGACCGACT CGGGCAGTAAGACCATCTCAGTGGCCACAGTCGACGGCCGCCGCCGACGCACTCTCTTCA GCCGTGACCTCAGCGAACCACGGGCCATTGCCGTCGACCCCCTGCGAGGGTGAGTGTCAC CACATCGGACCACCCCTCTCCTACCAGAGACAGTCACGGGGCTCAACGGTGCGGACCGGC AGACGCTGGTGGCAGACAGTATTGAGTGGCCTAACGGAATCACCCTCGATTTGCTGAACC AGCGCCTGTACTGGGTGGACTCCAAGCTGCACCAGCTGTCCAGCATTGACTGCAGCGGAG GCAACAGAAAGATGCTGATTTCCTCCCCCGACTTTCTGAGCCACCCTTTTGGGGTAGCTG TGTTCGAGGACAAGGTGTTCTGGACAGACCTAGAGAACGAGGCCATTTTCAGTGCAAATC GGCTCAATGGCCTGGAAATCTCCGTCCTCGCTGAGAACCTCAATAACCCACATGACATTG TCATCTTCCATGAGCTGAAGCAGCCAAGAGCTGCCGACGCCTGTGAGCTGAGCGCCCAGC CCAACGGAGGCTGTGAGTACCTGTGCCTTCCTGCTCCTCAGATCTCCAGCCACTCTCCCA AGTACACGTGTGCCTGTCCTGACACCATGTGGCTGGGCCCTGACATGAAGAGGTGCTATC GAGCGCCTCAGTCTACCTCAACCACGACGTTGGCCTCTACCACGGCGAGGACAGTAGCCG ACACCACAAGAGCCCCTGGGACCACCGTCTACAGCCCCACCTACCAGAACCATAGCACGG AGACCCTGAGCCCAGCAGCATCGGTCCCAAGCTCAGTTAGTGTCCCCAGGGCTCCCAGCG CCAGCAACCACTCCCAGCGCCATGGGAATGAAGGTGGCAAGATGGGCTCAACAGTTACCG CTGCTGTCATTGGGATCATCGTGCCCATGGTGGTAATAGCCCTGCTGTGCATGAGCGGCT ACCTGATCTGGAGAAACTGGAAGCGGAAGAACACCAAAAGCATGAATTTCGACAACCCCG TGTACAGGAAGACGACGGAAGAAGAGGATGAAGATGAGCTCCACATAGGCAGGACCGCGC AGATTGGCCACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCCTACATGGACAAAGCCAGCTACCCAGCGGAGCAGGAGGTCCTCATTGATGAGCAGC TGCACTCTCCAGAGGGCCTGGCGGTGGACTGGGTCCACAGGCACATCTATTGGACCGACT CGGGCAGTAAGACCATCTCAGTGGCCACAGTCGACGGCCGCCGCCGACGCACTCTCTTCA GCCGTGACCTCAGCGAACCACGGGCCATTGCCGTCGACCCCCTGCGAGGGTGAGTGTCAC CACATCGGACCACCCCTCTCCTACCAGAGACAGTCACGGGGCTCAACGGTGCGGACCGGC AGACGCTGGTGGCAGACAGTATTGAGTGGCCTAACGGAATCACCCTCGATTTGCTGAACC AGCGCCTGTACTGGGTGGACTCCAAGCTGCACCAGCTGTCCAGCATTGACTGCAGCGGAG GCAACAGAAAGATGCTGATTTCCTCCCCCGACTTTCTGAGCCACCCTTTTGGGGTAGCTG TGTTCGAGGACAAGGTGTTCTGGACAGACCTAGAGAACGAGGCCATTTTCAGTGCAAATC GGCTCAATGGCCTGGAAATCTCCGTCCTCGCTGAGAACCTCAATAACCCACATGACATTG TCATCTTCCATGAGCTGAAGCAGCCAAGAGCTGCCGACGCCTGTGAGCTGAGCGCCCAGC CCAACGGAGGCTGTGAGTACCTGTGCCTTCCTGCTCCTCAGATCTCCAGCCACTCTCCCA AGTACACGTGTGCCTGTCCTGACACCATGTGGCTGGGCCCTGACATGAAGAGGTGCTATC GAGCGCCTCAGTCTACCTCAACCACGACGTTGGCCTCTACCACGGCGAGGACAGTAGCCG ACACCACAAGAGCCCCTGGGACCACCGTCTACAGCCCCACCTACCAGAACCATAGCACGG AGACCCTGAGCCCAGCAGCATCGGTCCCAAGCTCAGTTAGTGTCCCCAGGGCTCCCAGCG CCAGCAACCACTCCCAGCGCCATGGGAATGAAGGTGGCAAGATGGGCTCAACAGTTACCG CTGCTGTCATTGGGATCATCGTGCCCATGGTGGTAATAGCCCTGCTGTGCATGAGCGGCT ACCTGATCTGGAGAAACTGGAAGCGGAAGAACACCAAAAGCATGAATTTCGACAACCCCG TGTACAGGAAGACGACGGAAGAAGAGGATGAAGATGAGCTCCACATAGGCAGGACCGCGC AGATTGGCCACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 343-489, - strand, RNAz p=0.99388 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 343-489, - strand, RNAz p=0.99388 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 3-243, gnl|bosTau2|chr12 (48357327-48357567) | |
| 3-243, gnl|canFam2|chr5 (58665004-58664826) | |
| 3-243, gnl|danRer3|chr3 (9876603-9876779) | |
| 3-243, gnl|dasNov1|scaffold_46821 (1736-1902) | |
| 3-243, gnl|echTel1|scaffold_229504 (1402-1570) | |
| 3-243, gnl|fr1|chrUn (95827223-95827388) | |
| 3-243, gnl|galGal2|chr8 (24918356-24918533) | |
| 3-243, gnl|hg17|chr1 (53441845-53442023) | |
| 3-243, gnl|Hg17|chr1 (53442088-53441836) | |
| 3-243, gnl|loxAfr1|scaffold_37850 (17242-17061) | |
| 3-243, gnl|mm7|chr4 (107232264-107232085) | |
| 3-243, gnl|Mm7|chr4 (107232018-107232258) | |
| 3-243, gnl|monDom2|scaffold_70 (282535-282344) | |
| 3-243, gnl|oryCun1|scaffold_202384 (38819-38639) | |
| 3-243, gnl|panTro1|chr1 (51688582-51688760) | |
| 3-243, gnl|rheMac2|chr1 (56143689-56143867) | |
| 3-243, gnl|rn3|chr5 (128962674-128962495) | |
| 3-243, gnl|tetNig1|chr15 (2975919-2976084) | |
| 3-243, gnl|xenTro1|scaffold_197 (705396-705569) | |
| 343-489, gnl|bosTau2|chr12 (48360318-48360464) | |
| 343-489, gnl|Hg17|chr1 (53439906-53439760) | |
| 343-489, gnl|Mm7|chr4 (107233614-107233760) | |
| 623-783, gnl|bosTau2|chr12 (48363066-48363226) | |
| 623-783, gnl|Hg17|chr1 (53436172-53436012) | |
| 623-783, gnl|Mm7|chr4 (107236363-107236523) | |
| 1050-1210, gnl|bosTau2|chr12 (48370201-48370361) | |
| 1050-1210, gnl|canFam2|chr5 (58678402-58678198) | |
| 1050-1210, gnl|danRer3|chr3 (9867877-9868045) | |
| 1050-1210, gnl|dasNov1|scaffold_7367 (13267-13058) | |
| 1050-1210, gnl|echTel1|scaffold_287032 (10557-10356) | |
| 1050-1210, gnl|fr1|chrUn (95816725-95816928) | |
| 1050-1210, gnl|galGal2|chr8 (24911302-24911503) | |
| 1050-1210, gnl|hg17|chr1 (53428367-53428575) | |
| 1050-1210, gnl|Hg17|chr1 (53428556-53428396) | |
| 1050-1210, gnl|loxAfr1|scaffold_11930 (6075-6284) | |
| 1050-1210, gnl|mm7|chr4 (107245607-107245398) | |
| 1050-1210, gnl|Mm7|chr4 (107245416-107245576) | |
| 1050-1210, gnl|monDom2|scaffold_70 (296996-296766) | |
| 1050-1210, gnl|oryCun1|scaffold_202384 (49370-49162) | |
| 1050-1210, gnl|panTro1|chr1 (51673570-51673778) | |
| 1050-1210, gnl|rheMac2|chr1 (56130240-56130448) | |
| 1050-1210, gnl|rn3|chr5 (128974958-128974748) | |
| 1050-1210, gnl|tetNig1|chr15 (2972065-2972238) | |
| 1050-1210, gnl|xenTro1|scaffold_197 (698626-698823) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-243, gnl|bosTau2|chr12 (48357327-48357567) | |
| 3-243, gnl|canFam2|chr5 (58665004-58664826) | |
| 3-243, gnl|danRer3|chr3 (9876603-9876779) | |
| 3-243, gnl|dasNov1|scaffold_46821 (1736-1902) | |
| 3-243, gnl|echTel1|scaffold_229504 (1402-1570) | |
| 3-243, gnl|fr1|chrUn (95827223-95827388) | |
| 3-243, gnl|galGal2|chr8 (24918356-24918533) | |
| 3-243, gnl|hg17|chr1 (53441845-53442023) | |
| 3-243, gnl|Hg17|chr1 (53442088-53441836) | |
| 3-243, gnl|loxAfr1|scaffold_37850 (17242-17061) | |
| 3-243, gnl|mm7|chr4 (107232264-107232085) | |
| 3-243, gnl|Mm7|chr4 (107232018-107232258) | |
| 3-243, gnl|monDom2|scaffold_70 (282535-282344) | |
| 3-243, gnl|oryCun1|scaffold_202384 (38819-38639) | |
| 3-243, gnl|panTro1|chr1 (51688582-51688760) | |
| 3-243, gnl|rheMac2|chr1 (56143689-56143867) | |
| 3-243, gnl|rn3|chr5 (128962674-128962495) | |
| 3-243, gnl|tetNig1|chr15 (2975919-2976084) | |
| 3-243, gnl|xenTro1|scaffold_197 (705396-705569) | |
| 343-489, gnl|bosTau2|chr12 (48360318-48360464) | |
| 343-489, gnl|Hg17|chr1 (53439906-53439760) | |
| 343-489, gnl|Mm7|chr4 (107233614-107233760) | |
| 623-783, gnl|bosTau2|chr12 (48363066-48363226) | |
| 623-783, gnl|Hg17|chr1 (53436172-53436012) | |
| 623-783, gnl|Mm7|chr4 (107236363-107236523) | |
| 1050-1210, gnl|bosTau2|chr12 (48370201-48370361) | |
| 1050-1210, gnl|canFam2|chr5 (58678402-58678198) | |
| 1050-1210, gnl|danRer3|chr3 (9867877-9868045) | |
| 1050-1210, gnl|dasNov1|scaffold_7367 (13267-13058) | |
| 1050-1210, gnl|echTel1|scaffold_287032 (10557-10356) | |
| 1050-1210, gnl|fr1|chrUn (95816725-95816928) | |
| 1050-1210, gnl|galGal2|chr8 (24911302-24911503) | |
| 1050-1210, gnl|hg17|chr1 (53428367-53428575) | |
| 1050-1210, gnl|Hg17|chr1 (53428556-53428396) | |
| 1050-1210, gnl|loxAfr1|scaffold_11930 (6075-6284) | |
| 1050-1210, gnl|mm7|chr4 (107245607-107245398) | |
| 1050-1210, gnl|Mm7|chr4 (107245416-107245576) | |
| 1050-1210, gnl|monDom2|scaffold_70 (296996-296766) | |
| 1050-1210, gnl|oryCun1|scaffold_202384 (49370-49162) | |
| 1050-1210, gnl|panTro1|chr1 (51673570-51673778) | |
| 1050-1210, gnl|rheMac2|chr1 (56130240-56130448) | |
| 1050-1210, gnl|rn3|chr5 (128974958-128974748) | |
| 1050-1210, gnl|tetNig1|chr15 (2972065-2972238) | |
| 1050-1210, gnl|xenTro1|scaffold_197 (698626-698823) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| fhi (0.169578) | |
| ecc (0.115035) |