Ss1.1-Ova1-OVRM10077E03.5
|
AAGTCACTTCCGGGCTGGGGTGTTTGTTTGGACTGGAGAAGGGAGGCGGCGGGCGAAGCG
CGCGTCGAGCGGGGGAGCGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACCGGATTCGTT
GGCTGCCGTCCCCGCTGCCGTGCACTGGGTTAAAAACTACATCTAACGCCAACCATGAAA
GATCCAAGTCGCAGCAGTACTAGCCCAAGCATCATCAATGAAGATGTGATTATTAACGGT
CATTCTCATGAAGATGACAATCCATTTGCAGAATACATGTGGATGGAAAATGAAGAGGAA
TTCAACAGACAAATAGAAGAGGAGTTATGGGAAGAAGAATTTATTGAACGTTGTTTCCAA
GAAATGCTGGAAGAAGAAGAGGAGCATGAGTGGTTTATTCCAGCTCGAGATCTCCCACAA
ACTATGGACCAAATCCAAGACCAATTTAATGACCTTGTTATCAGTGATGGCTCTTCCCTG
GAAGATCTTGTGGTCAAGAGCAATCTGAATCCAAATGCAAAGGAGTTTGTTCCTGGGGTG
AAGTACTAAAATATTTGAGTAGACGGGGCCCTCTTTTGGTGGATGTAGCACAATTTCCAC
ACTGTGAAGGCAGTATTAGAAGACTTAATTGTAAAAGCTCTCTCTTGTCACTGTGTTACA
CTTATGCATTGCCAAAGTTTTGTTAGTCTTGCATGCTTAATAAAAGTGCTGAGACTGTTA
TTAAGTAAAAAGCTGTCAAACGTTTACTGAAAATAGAATTGGCCCCATAGCTTGATGTAA
AGACAGCGAGGAAAGAAGCACCAGTCAAGTTGTGTCAAAGCACCAAATTCAGAGACCTCT
AAATCTTAGTGAATTGTCGTTTTTGAGATGAAACTGGTCCTTTAGGGTTAGCTGACACTT
GTTAATGTCCACACTTCTTTTAAATTTAAATTAAGTTCTAGTTGTTCAGAGAATTTCTCA
GTTCAGACTTAAATTTGCATTTGTCCCCATCAAAAACAATCTCCTTTTTCTGCAGAAGGC
GTGTTAGTTGATTTGAACTAATTTATCATAGACAAGTTTGTCTTTGGTTACTGAGGTTAG
AAGGTAGTGAACCGAAGTCCTGGCTTTTACGTTATGTTACCACGTAGGAAATACTAAATG
CTCCTCCTGTTACATCTGAGAAAGTATGCGATTTGAGAATTGCATCCTCTCCTAAGGAGT
CCCTGCATCACAGCTCTACCTGTGTAAAGTCCAGCATTTGACCGACCCCTAATCCACTTG
AACAAAGGAGTCGCATTCTTTGAGTGGTGCTTTTCCTTGCTTTGTTAACCATCACTACAA
TAGTCTGCAGCACAACTTTTCTTTTAACAAAGCTAGAACAGTTTTGGCTTCTTAAACTTC
ATATTTGGGTAGGTTAAGCTGCCATACGTGTTCAGTGTGAATAGTGTTTAAGTTGAAAAT
ATTGTAAAAAAAGTATATTTTTTCAAAAATATTTAAAAAAATAAATAATAGTAGAACTGA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGTCACTTCCGGGCTGGGGTGTTTGTTTGGACTGGAGAAGGGAGGCGGCGGGCGAAGCG
CGCGTCGAGCGGGGGAGCGGCGCTGCCTGTGGAGATCCGCGGAGGCCGACCGGATTCGTT
GGCTGCCGTCCCCGCTGCCGTGCACTGGGTTAAAAACTACATCTAACGCCAACCATGAAA
GATCCAAGTCGCAGCAGTACTAGCCCAAGCATCATCAATGAAGATGTGATTATTAACGGT
CATTCTCATGAAGATGACAATCCATTTGCAGAATACATGTGGATGGAAAATGAAGAGGAA
TTCAACAGACAAATAGAAGAGGAGTTATGGGAAGAAGAATTTATTGAACGTTGTTTCCAA
GAAATGCTGGAAGAAGAAGAGGAGCATGAGTGGTTTATTCCAGCTCGAGATCTCCCACAA
ACTATGGACCAAATCCAAGACCAATTTAATGACCTTGTTATCAGTGATGGCTCTTCCCTG
GAAGATCTTGTGGTCAAGAGCAATCTGAATCCAAATGCAAAGGAGTTTGTTCCTGGGGTG
AAGTACTAAAATATTTGAGTAGACGGGGCCCTCTTTTGGTGGATGTAGCACAATTTCCAC
ACTGTGAAGGCAGTATTAGAAGACTTAATTGTAAAAGCTCTCTCTTGTCACTGTGTTACA
CTTATGCATTGCCAAAGTTTTGTTAGTCTTGCATGCTTAATAAAAGTGCTGAGACTGTTA
TTAAGTAAAAAGCTGTCAAACGTTTACTGAAAATAGAATTGGCCCCATAGCTTGATGTAA
AGACAGCGAGGAAAGAAGCACCAGTCAAGTTGTGTCAAAGCACCAAATTCAGAGACCTCT
AAATCTTAGTGAATTGTCGTTTTTGAGATGAAACTGGTCCTTTAGGGTTAGCTGACACTT
GTTAATGTCCACACTTCTTTTAAATTTAAATTAAGTTCTAGTTGTTCAGAGAATTTCTCA
GTTCAGACTTAAATTTGCATTTGTCCCCATCAAAAACAATCTCCTTTTTCTGCAGAAGGC
GTGTTAGTTGATTTGAACTAATTTATCATAGACAAGTTTGTCTTTGGTTACTGAGGTTAG
AAGGTAGTGAACCGAAGTCCTGGCTTTTACGTTATGTTACCACGTAGGAAATACTAAATG
CTCCTCCTGTTACATCTGAGAAAGTATGCGATTTGAGAATTGCATCCTCTCCTAAGGAGT
CCCTGCATCACAGCTCTACCTGTGTAAAGTCCAGCATTTGACCGACCCCTAATCCACTTG
AACAAAGGAGTCGCATTCTTTGAGTGGTGCTTTTCCTTGCTTTGTTAACCATCACTACAA
TAGTCTGCAGCACAACTTTTCTTTTAACAAAGCTAGAACAGTTTTGGCTTCTTAAACTTC
ATATTTGGGTAGGTTAAGCTGCCATACGTGTTCAGTGTGAATAGTGTTTAAGTTGAAAAT
ATTGTAAAAAAAGTATATTTTTTCAAAAATATTTAAAAAAATAAATAATAGTAGAACTGA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
148-312, gnl|bosTau2|chr7 (37269118-37269282) |
|
148-312, gnl|Hg17|chr5 (138727346-138727510) |
|
148-312, gnl|Mm7|chr18 (35986971-35987135) |
| |
|
492-867, gnl|bosTau2|chr7 (37273009-37273379) |
|
492-867, gnl|Hg17|chr5 (138732320-138732762) |
|
492-867, gnl|Mm7|chr18 (35992299-35992751) |
| |
|
921-1500, gnl|bosTau2|chr7 (37273351-37273942) |
|
921-1500, gnl|canFam2|chr2 (37544708-37545531) |
|
921-1500, gnl|dasNov1|scaffold_10253 (44277-45107) |
|
921-1500, gnl|echTel1|scaffold_105230 (1953-2772) |
|
921-1500, gnl|galGal2|chr13 (7096967-7097861) |
|
921-1500, gnl|hg17|chr5 (138732457-138733242) |
|
921-1500, gnl|Hg17|chr5 (138732696-138733305) |
|
921-1500, gnl|loxAfr1|scaffold_5645 (8631-9441) |
|
921-1500, gnl|mm7|chr18 (35992433-35993222) |
|
921-1500, gnl|Mm7|chr18 (35992640-35993287) |
|
921-1500, gnl|monDom2|scaffold_6 (69736592-69735716) |
|
921-1500, gnl|oryCun1|scaffold_175633 (308-1109) |
|
921-1500, gnl|panTro1|chr4 (145334836-145335629) |
|
921-1500, gnl|rheMac2|chr6 (135788667-135789476) |
|
921-1500, gnl|rn3|chr18 (28266626-28267439) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
148-312, gnl|bosTau2|chr7 (37269118-37269282) |
|
148-312, gnl|Hg17|chr5 (138727346-138727510) |
|
148-312, gnl|Mm7|chr18 (35986971-35987135) |
| |
|
492-867, gnl|bosTau2|chr7 (37273009-37273379) |
|
492-867, gnl|Hg17|chr5 (138732320-138732762) |
|
492-867, gnl|Mm7|chr18 (35992299-35992751) |
| |
|
921-1500, gnl|bosTau2|chr7 (37273351-37273942) |
|
921-1500, gnl|canFam2|chr2 (37544708-37545531) |
|
921-1500, gnl|dasNov1|scaffold_10253 (44277-45107) |
|
921-1500, gnl|echTel1|scaffold_105230 (1953-2772) |
|
921-1500, gnl|galGal2|chr13 (7096967-7097861) |
|
921-1500, gnl|hg17|chr5 (138732457-138733242) |
|
921-1500, gnl|Hg17|chr5 (138732696-138733305) |
|
921-1500, gnl|loxAfr1|scaffold_5645 (8631-9441) |
|
921-1500, gnl|mm7|chr18 (35992433-35993222) |
|
921-1500, gnl|Mm7|chr18 (35992640-35993287) |
|
921-1500, gnl|monDom2|scaffold_6 (69736592-69735716) |
|
921-1500, gnl|oryCun1|scaffold_175633 (308-1109) |
|
921-1500, gnl|panTro1|chr4 (145334836-145335629) |
|
921-1500, gnl|rheMac2|chr6 (135788667-135789476) |
|
921-1500, gnl|rn3|chr18 (28266626-28267439) |
|
sug (1.4002) |
|
tbr (1.07925) |
|
ova (1.03306) |
|
pro (1.02407) |
|
ste (0.946458) |
|
pla (0.935704) |
|
spl (0.859107) |
|
aor (0.781097) |
|
thg (0.760746) |
|
bla (0.746083) |
|
tra (0.738552) |
|
ssp (0.677599) |
|
tes (0.623441) |
|
isp (0.601504) |
|
fat (0.58971) |
|
lin (0.582411) |
|
ldo (0.582016) |
|
nep (0.551775) |
|
sin (0.524843) |
|
rec (0.519211) |
|
kid (0.518941) |
|
mga (0.480615) |
|
cbe (0.478469) |
|
pgl (0.473934) |
|
cbl (0.45919) |
|
spc (0.453463) |
|
ski (0.440205) |
|
liv (0.438853) |
|
nms (0.427716) |
|
fcc (0.39557) |
|
col (0.390016) |
|
ebs (0.354904) |
|
fhi (0.339155) |
|
sme (0.305437) |
|
lun (0.300978) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
che (0.272628) |
|
fce (0.271592) |
|
ese (0.253004) |
|
eru (0.240096) |
|
med (0.232504) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
hea (0.204499) |
|
eje (0.197668) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
nje (0.16592) |
|
fco (0.157208) |
|
cli (0.152812) |
|
eli (0.151814) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ret (0.128733) |
|
jej (0.0989218) |
|
sug (1.4002) |
|
tbr (1.07925) |
|
ova (1.03306) |
|
pro (1.02407) |
|
ste (0.946458) |
|
pla (0.935704) |
|
spl (0.859107) |
|
aor (0.781097) |
|
thg (0.760746) |
|
bla (0.746083) |
|
tra (0.738552) |
|
ssp (0.677599) |
|
tes (0.623441) |
|
isp (0.601504) |
|
fat (0.58971) |
|
lin (0.582411) |
|
ldo (0.582016) |
|
nep (0.551775) |
|
sin (0.524843) |
|
rec (0.519211) |
|
kid (0.518941) |
|
mga (0.480615) |
|
cbe (0.478469) |
|
pgl (0.473934) |
|
cbl (0.45919) |
|
spc (0.453463) |
|
ski (0.440205) |
|
liv (0.438853) |
|
nms (0.427716) |
|
fcc (0.39557) |
|
col (0.390016) |
|
ebs (0.354904) |
|
fhi (0.339155) |
|
sme (0.305437) |
|
lun (0.300978) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
che (0.272628) |
|
fce (0.271592) |
|
ese (0.253004) |
|
eru (0.240096) |
|
med (0.232504) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
hea (0.204499) |
|
eje (0.197668) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
nje (0.16592) |
|
fco (0.157208) |
|
cli (0.152812) |
|
eli (0.151814) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ret (0.128733) |
|
jej (0.0989218) |
