Ss1.1-Ova1-OVRM10077F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAATCATCAGGCAACAGGAGATGTGTGTACACTGATGATGTGCCTCCAGGACAAAGGA CTGGTTGTTGCGCAAATGATGTGGTTGATGGATCATATTTTTAAGTACACCAACTTTGGA ATTGTTTCTCTAATTCACGGAGACTTCTTTATAAGACAGGGAAAATCTCATCGTGACCAA CAGCTGCTTCTTCTCAAGAAACACCTAGAAAATAATTACAGGAGCAGAGGTCGAAAGTGG GTTGTTCTTTTTCCAGAAGGGGGCTTCCTCAGAAAGAGGCGAGAAACCAGTCAGGCATTT GCCAAGAAAAATAACTTGCCGTTTCTTACACATGTCACTCTGCCAAGGATTGGGGCAACA AAAATTATTTTGAGTGCACTTGTAGCACGACAGGAAAATGGAAGTCCTGCAGGAGGAGAT GCTAAAGAATTAGACAGCAAATCAGAGGGCCTCCAGTGGATAATAGATACAACCATAGCT TATCCCAAAGCTGAACCCATAGATATTCAAACCTGGATCCTTGGATACAGGAAACCAGCA GTCACACATGTACATTACAGGATCTTTCCAATTAAAGATGTGCCCCTAGAGACTGATGAC CTTTCCAACTGGCTCTATCAACGTTTTATTGAAAAAGAGGACCTCTTATCACATTTTTAT GAAACAGGGGCTTTTCCACCTGCCAAAGGCCATAAAGAAGCTATTTCCAGGGCGATGACC CTCAGCAATACGTGGATATTTCTCATACAGTCTTTTGCGTTTTTGTCGGGCTATATGTGG TACAGCATCTTTCAGTATTTTTACCATTGCCTGTTTTAGGAAATTCACTTGGACTTGTCA AGGTACCATAGGAATTTAGACTTTCATAAGCGTGCATCATTTTACATGGGCAAATCAGAA CATAAAAAAAAAAAAGCAAAGAAAATTCAATGGATGGATTAATATTTATCCCCCTTTGGG ATGTTTTAAAACTCTACTAAAATGAGGATCAATAATATAATGACCTGCTAATTAATAATG TTTTAAGGACTTTTCACGTTTTAAAAAGGTACACTCTACTACACATTTAAGCCAACATCA CATTCGGAGAAGAAGAAATTGTAAAATCATCCTAGAGGACTCTGGAGAAATTCTCTTGCC ACCAGATATGCCTGATAATCTAGTTCCAGTGCAGAAAGTTGTACGCGTCCGTTCCTCTGA GCTAGCGGTCTCGATCGGGCAGTGCTTTGGCGTGCCCTCACCCCCCCGCCCCCCGATCTT GCTGTGTTCCTGGCAGCCTTGAGGTGAGCTTCTTGGCACCTTCCGAAGAACCATTGCCCT GTTCGCAGTGGCACCCCTGTCCTCCGCGGCTCCGGGAGGTTCGGTGTCCAGCGTGCTCTG GGGGAGAGCAGTGTCCCCTGGACATATTCCGGTACTAGAACGTGTGCTTCAAAAAGAGCA GCCCAGTCCAGTGCCAGCGCGACATGCACGTGTGCTTCCTCTTGTCCACGGGGTGGGGCT GGGGGTGTCCCTGGATTTCTCTTTGTCTATAGAAGGCATATCATGGATCGGCCGTTGTCT TTTACAAAATGCACTTTTATCGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAATCATCAGGCAACAGGAGATGTGTGTACACTGATGATGTGCCTCCAGGACAAAGGA CTGGTTGTTGCGCAAATGATGTGGTTGATGGATCATATTTTTAAGTACACCAACTTTGGA ATTGTTTCTCTAATTCACGGAGACTTCTTTATAAGACAGGGAAAATCTCATCGTGACCAA CAGCTGCTTCTTCTCAAGAAACACCTAGAAAATAATTACAGGAGCAGAGGTCGAAAGTGG GTTGTTCTTTTTCCAGAAGGGGGCTTCCTCAGAAAGAGGCGAGAAACCAGTCAGGCATTT GCCAAGAAAAATAACTTGCCGTTTCTTACACATGTCACTCTGCCAAGGATTGGGGCAACA AAAATTATTTTGAGTGCACTTGTAGCACGACAGGAAAATGGAAGTCCTGCAGGAGGAGAT GCTAAAGAATTAGACAGCAAATCAGAGGGCCTCCAGTGGATAATAGATACAACCATAGCT TATCCCAAAGCTGAACCCATAGATATTCAAACCTGGATCCTTGGATACAGGAAACCAGCA GTCACACATGTACATTACAGGATCTTTCCAATTAAAGATGTGCCCCTAGAGACTGATGAC CTTTCCAACTGGCTCTATCAACGTTTTATTGAAAAAGAGGACCTCTTATCACATTTTTAT GAAACAGGGGCTTTTCCACCTGCCAAAGGCCATAAAGAAGCTATTTCCAGGGCGATGACC CTCAGCAATACGTGGATATTTCTCATACAGTCTTTTGCGTTTTTGTCGGGCTATATGTGG TACAGCATCTTTCAGTATTTTTACCATTGCCTGTTTTAGGAAATTCACTTGGACTTGTCA AGGTACCATAGGAATTTAGACTTTCATAAGCGTGCATCATTTTACATGGGCAAATCAGAA CATAAAAAAAAAAAAGCAAAGAAAATTCAATGGATGGATTAATATTTATCCCCCTTTGGG ATGTTTTAAAACTCTACTAAAATGAGGATCAATAATATAATGACCTGCTAATTAATAATG TTTTAAGGACTTTTCACGTTTTAAAAAGGTACACTCTACTACACATTTAAGCCAACATCA CATTCGGAGAAGAAGAAATTGTAAAATCATCCTAGAGGACTCTGGAGAAATTCTCTTGCC ACCAGATATGCCTGATAATCTAGTTCCAGTGCAGAAAGTTGTACGCGTCCGTTCCTCTGA GCTAGCGGTCTCGATCGGGCAGTGCTTTGGCGTGCCCTCACCCCCCCGCCCCCCGATCTT GCTGTGTTCCTGGCAGCCTTGAGGTGAGCTTCTTGGCACCTTCCGAAGAACCATTGCCCT GTTCGCAGTGGCACCCCTGTCCTCCGCGGCTCCGGGAGGTTCGGTGTCCAGCGTGCTCTG GGGGAGAGCAGTGTCCCCTGGACATATTCCGGTACTAGAACGTGTGCTTCAAAAAGAGCA GCCCAGTCCAGTGCCAGCGCGACATGCACGTGTGCTTCCTCTTGTCCACGGGGTGGGGCT GGGGGTGTCCCTGGATTTCTCTTTGTCTATAGAAGGCATATCATGGATCGGCCGTTGTCT TTTACAAAATGCACTTTTATCGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 158-433, gnl|bosTau2|chr16 (53697554-53697829) | |
| 158-433, gnl|canFam2|chr7 (13089913-13090184) | |
| 158-433, gnl|danRer3|chr20 (16380243-16380492) | |
| 158-433, gnl|dasNov1|scaffold_147264 (681-956) | |
| 158-433, gnl|echTel1|scaffold_270002 (2841-3112) | |
| 158-433, gnl|fr1|chrUn (80685372-80685136) | |
| 158-433, gnl|galGal2|chr3 (18463707-18463443) | |
| 158-433, gnl|Hg17|chr1 (208345241-208344966) | |
| 158-433, gnl|hg17|chr8 (30960898-30961173) | |
| 158-433, gnl|loxAfr1|scaffold_58583 (4992-5263) | |
| 158-433, gnl|mm7|chr1 (191313172-191312897) | |
| 158-433, gnl|Mm7|chr1 (191312897-191313172) | |
| 158-433, gnl|monDom2|scaffold_13 (15540306-15540581) | |
| 158-433, gnl|oryCun1|scaffold_208496 (30409-30135) | |
| 158-433, gnl|panTro1|chr7 (32050431-32050706) | |
| 158-433, gnl|rheMac2|chr8 (31247032-31247307) | |
| 158-433, gnl|rn3|chrX (62146824-62146549) | |
| 158-433, gnl|tetNig1|chr14 (4190996-4191233) | |
| 158-433, gnl|xenTro1|scaffold_68 (1620213-1619934) | |
| 666-1584, gnl|bosTau2|chr16 (53728274-53729193) | |
| 666-1584, gnl|Hg17|chr1 (208311789-208310899) | |
| 666-1584, gnl|Mm7|chr1 (191331306-191332159) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-433, gnl|bosTau2|chr16 (53697554-53697829) | |
| 158-433, gnl|canFam2|chr7 (13089913-13090184) | |
| 158-433, gnl|danRer3|chr20 (16380243-16380492) | |
| 158-433, gnl|dasNov1|scaffold_147264 (681-956) | |
| 158-433, gnl|echTel1|scaffold_270002 (2841-3112) | |
| 158-433, gnl|fr1|chrUn (80685372-80685136) | |
| 158-433, gnl|galGal2|chr3 (18463707-18463443) | |
| 158-433, gnl|Hg17|chr1 (208345241-208344966) | |
| 158-433, gnl|hg17|chr8 (30960898-30961173) | |
| 158-433, gnl|loxAfr1|scaffold_58583 (4992-5263) | |
| 158-433, gnl|mm7|chr1 (191313172-191312897) | |
| 158-433, gnl|Mm7|chr1 (191312897-191313172) | |
| 158-433, gnl|monDom2|scaffold_13 (15540306-15540581) | |
| 158-433, gnl|oryCun1|scaffold_208496 (30409-30135) | |
| 158-433, gnl|panTro1|chr7 (32050431-32050706) | |
| 158-433, gnl|rheMac2|chr8 (31247032-31247307) | |
| 158-433, gnl|rn3|chrX (62146824-62146549) | |
| 158-433, gnl|tetNig1|chr14 (4190996-4191233) | |
| 158-433, gnl|xenTro1|scaffold_68 (1620213-1619934) | |
| 666-1584, gnl|bosTau2|chr16 (53728274-53729193) | |
| 666-1584, gnl|Hg17|chr1 (208311789-208310899) | |
| 666-1584, gnl|Mm7|chr1 (191331306-191332159) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| rec (0.17307) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.17307) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| cty (0.10408) |