Non-Coding RNA Search

Ss1.1-Ova1-OVRM10077G09.5

Sequence:


               
               TGCATCCACTTCAGGGGCTTCTTTAGTAAAGGGAACGGCCGAGCTGAACCTGGTATTTAA
CCTGAGTGTAGTATTTAACGACGTCTAGAAGCACGGTTGTGGGTGGTGGTTTGGTCAGCA
TATCTTAGGTATATAATAACTTTGAAGCCATAACTTAACTGGAGTGGTTTGGTTTTCTTT
TTTTTTTTATTTTATTTTTTTTAATTTTATTGGGAGGGTCTGGATTTTAACTTTTTTTAA
CTATTATTAAGTTTTTATAAAAAGAAAACCATCTCTGTGTGACAATTACCTCTCAGTCTA
TTTGTTTTTAAGGAAATCCCTATAAAAACAACCACACACACACAAAAGGCTCCAGTCAAA
CGCACATAGTTCAATCACACTGGAAATGTCTGTCTTTTGGACCTGAGCCTGTTCCCCCTA
CTGAGCAGCAGGAGTCCCTCTGCCGGGGGTTCGGGGGTTGGTCTCTCTTGCGCTCTGCCT
CCCCTCCCAGCCCCGTAAGTGGGTTTTGCACTGGGGCCCTAGCCTTCTGTGCATTATCCC
GCAGGTTGCACCTCCTCCTCCGGGCATTTACTCAACAGACATTCGTTGTGGGCCTGTCAG
GTGCCAGGCACTGCTCTGGGCACTGGCAAACACATCTGTGAACGAGACAGGCTTGGGTCC
TCCTCTTGGAGCACTGACGACGGAACTGATTCAAGTTAGCGGGTGCCTGTTTTGAGACCA
GAAGTTTTCCTAGTTGGTTCTGAGAGCCTTTTGAGCCTGGAGTGGTTGCTCTGATATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATCCACTTCAGGGGCTTCTTTAGTAAAGGGAACGGCCGAGCTGAACCTGGTATTTAA
CCTGAGTGTAGTATTTAACGACGTCTAGAAGCACGGTTGTGGGTGGTGGTTTGGTCAGCA
TATCTTAGGTATATAATAACTTTGAAGCCATAACTTAACTGGAGTGGTTTGGTTTTCTTT
TTTTTTTTATTTTATTTTTTTTAATTTTATTGGGAGGGTCTGGATTTTAACTTTTTTTAA
CTATTATTAAGTTTTTATAAAAAGAAAACCATCTCTGTGTGACAATTACCTCTCAGTCTA
TTTGTTTTTAAGGAAATCCCTATAAAAACAACCACACACACACAAAAGGCTCCAGTCAAA
CGCACATAGTTCAATCACACTGGAAATGTCTGTCTTTTGGACCTGAGCCTGTTCCCCCTA
CTGAGCAGCAGGAGTCCCTCTGCCGGGGGTTCGGGGGTTGGTCTCTCTTGCGCTCTGCCT
CCCCTCCCAGCCCCGTAAGTGGGTTTTGCACTGGGGCCCTAGCCTTCTGTGCATTATCCC
GCAGGTTGCACCTCCTCCTCCGGGCATTTACTCAACAGACATTCGTTGTGGGCCTGTCAG
GTGCCAGGCACTGCTCTGGGCACTGGCAAACACATCTGTGAACGAGACAGGCTTGGGTCC
TCCTCTTGGAGCACTGACGACGGAACTGATTCAAGTTAGCGGGTGCCTGTTTTGAGACCA
GAAGTTTTCCTAGTTGGTTCTGAGAGCCTTTTGAGCCTGGAGTGGTTGCTCTGATATCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               232-345, - strand, RNAz p=0.524975
               

               
               495-611, - strand, RNAz p=0.51472

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-345, - strand, RNAz p=0.524975
               

               
               495-611, - strand, RNAz p=0.51472

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-776, gnl|bosTau2|chr5 (19441951-19442729)
               

               
               1-776, gnl|Hg17|chr12 (50675438-50676151)
               

               
               1-776, gnl|Mm7|chr15 (101197934-101198660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-776, gnl|bosTau2|chr5 (19441951-19442729)
               

               
               1-776, gnl|Hg17|chr12 (50675438-50676151)
               

               
               1-776, gnl|Mm7|chr15 (101197934-101198660)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               ute (0.132784)

	232-345, - strand, RNAz p=0.524975
	495-611, - strand, RNAz p=0.51472

	1-776, gnl\|bosTau2\|chr5 (19441951-19442729)
	1-776, gnl\|Hg17\|chr12 (50675438-50676151)
	1-776, gnl\|Mm7\|chr15 (101197934-101198660)