Non-Coding RNA Search

Ss1.1-Ova1-OVRM10078C05.5

Sequence:


               
               AAGTCAAAAACCTGATGGGCTTCTTTCTGATACATTAGGTTGTTTACTGTCTTGAGTGGC
AGAGGGCCTCTTATAGTTGAGCTTTCTCTTTTTGCCTGATGCTTAATATGATGGGGATGG
GAAGGAGAAAGGGCAATATTTAGTGAACTTGGCACTCTAAACACTAGGTTCTGATGAGGG
ATTCTCACTTGGTCTGGTAATAGACACCTCTAACTGCTCTTGTGCTGACTGCTCTCACAG
GAGATATTTTCCTTGTTCGGGGTGGGATGCGTGCAGTAGAGTTCAAAGTAGTGGAGACGG
ATCCCAGTCCTTACTGCATTGTTGCACCAGACACAGTGATCCACTGTGAAGGAGAGCCTA
TCAAACGAGAGGATGAAGAAGAGTCCTTGAACGAAGTGGGCTATGATGACATTGGTGGCT
GCAGGAAACAGCTAGCTCAGATAAAGGAGATGGTGGAGCTGCCCTTGAGACATCCTGCCC
TCTTTAAGGCAATTGGTGTGAAGCCTCCTCGGGGAATCCTGCTCTATGGACCTCCCGGGA
CTGGGAAGACCCTGATTGCTCGAGCTGTGGCAAATGAGACTGGAGCCTTCTTCTTCTTGA
TCAATGGTCCTGAGATCATGAGCAAGTTGGCTGGTGAGTCTGAGAGCAACCTTCGTAAAG
CCTTTGAGGAGGCTGAGAAGAATGCTCCGGCTATCATTTTCATTGATGAGTTGGATGCCA
TCGCTCCCAAGAGAGAGAAAACCCATGGGGAGGTGGAGCGGCGTATTGTATCACAGTTAT
TGACTCTCATGGATGGCCTAAAGCAGAGAGCACATGTGATTGTCATGGCAGCAACCAACA
GACCCAACAGCATTGACCCAGCCCTACGACGATTTGGTCGCTTTGACAGGGAGGTAGATA
TTGGAATTCCTGATGCTACAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTCAAAAACCTGATGGGCTTCTTTCTGATACATTAGGTTGTTTACTGTCTTGAGTGGC
AGAGGGCCTCTTATAGTTGAGCTTTCTCTTTTTGCCTGATGCTTAATATGATGGGGATGG
GAAGGAGAAAGGGCAATATTTAGTGAACTTGGCACTCTAAACACTAGGTTCTGATGAGGG
ATTCTCACTTGGTCTGGTAATAGACACCTCTAACTGCTCTTGTGCTGACTGCTCTCACAG
GAGATATTTTCCTTGTTCGGGGTGGGATGCGTGCAGTAGAGTTCAAAGTAGTGGAGACGG
ATCCCAGTCCTTACTGCATTGTTGCACCAGACACAGTGATCCACTGTGAAGGAGAGCCTA
TCAAACGAGAGGATGAAGAAGAGTCCTTGAACGAAGTGGGCTATGATGACATTGGTGGCT
GCAGGAAACAGCTAGCTCAGATAAAGGAGATGGTGGAGCTGCCCTTGAGACATCCTGCCC
TCTTTAAGGCAATTGGTGTGAAGCCTCCTCGGGGAATCCTGCTCTATGGACCTCCCGGGA
CTGGGAAGACCCTGATTGCTCGAGCTGTGGCAAATGAGACTGGAGCCTTCTTCTTCTTGA
TCAATGGTCCTGAGATCATGAGCAAGTTGGCTGGTGAGTCTGAGAGCAACCTTCGTAAAG
CCTTTGAGGAGGCTGAGAAGAATGCTCCGGCTATCATTTTCATTGATGAGTTGGATGCCA
TCGCTCCCAAGAGAGAGAAAACCCATGGGGAGGTGGAGCGGCGTATTGTATCACAGTTAT
TGACTCTCATGGATGGCCTAAAGCAGAGAGCACATGTGATTGTCATGGCAGCAACCAACA
GACCCAACAGCATTGACCCAGCCCTACGACGATTTGGTCGCTTTGACAGGGAGGTAGATA
TTGGAATTCCTGATGCTACAGGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-112, + strand, RNAz p=0.589805

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, + strand, RNAz p=0.589805

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-372, gnl|bosTau2|chr8 (27859220-27858843)
               

               
               1-372, gnl|Hg17|chr9 (35055636-35055247)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr8 (27859220-27858843)
               

               
               1-372, gnl|Hg17|chr9 (35055636-35055247)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               clu (0.478583)
               

               
               fli (0.202881)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               fli (0.202881)
               

               
               eep (0.122564)

	1-372, gnl\|bosTau2\|chr8 (27859220-27858843)
	1-372, gnl\|Hg17\|chr9 (35055636-35055247)