Non-Coding RNA Search

Ss1.1-Ova1-OVRM10079C12.5

Sequence:


               
               CTGGTCCTGGGCAACATGGTTTTCGAGGGGGCCTCCAGCCTCGCTGTGTCCCTGTTGCTG
CTCATGCGGGCCCTGCCCTCAGCGTCCTACTCCGTGTCCCTGCAGGGCACCTTCCTGGAG
GACACAGGGGGCAGTGGGGAGGCCGAGGGCTCGTCGGCCTCCTCCCCAAGCCTCCCGCCA
CCCCGGACCCCAGCCCTCAGCCCCACATCCCTGGGGCCCCAGCCCACACCCCTGGCAGGC
CCCAAGCCCCCCACCAACTTCCTGGATGGCATCGTGGATTTCTTCCGCCAGTATGTGATG
CTCATCGCCGTGGTGGGCTCCCTGGTGTTCCTGCTGATGTTTATTGTCTGTGCCGCTGTC
ATCACTCGCCAGAAGCACAAGGCCTCTGCCTACTACCCCTCGTCCTTCCCTAAGAAGAAG
TATGTGGACCAGAGTGACCGGGCCGGGGGCCCCCGAGCCTTCAGCGAGGTCCCCGACAGG
GCCCCCGACGGCAGGCCCGAGGAGGCCCGGGATTCCTCCCAGCAGCTCCAGGCTGACATC
CTTGCCGCCACACAGAACCTCAAGTCTCCCGCTAGGGCCACCTTGGGCGGTGGAGACGGA
GCCCGGATGATGGAGGGCAAGTCAGAGGAAGAGGAGAAAGGCGCCCGGGAGGTGGACCAG
GACGCCCAGGGACAGGAGGTCCTGGCAGAGGAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCCTGGGCAACATGGTTTTCGAGGGGGCCTCCAGCCTCGCTGTGTCCCTGTTGCTG
CTCATGCGGGCCCTGCCCTCAGCGTCCTACTCCGTGTCCCTGCAGGGCACCTTCCTGGAG
GACACAGGGGGCAGTGGGGAGGCCGAGGGCTCGTCGGCCTCCTCCCCAAGCCTCCCGCCA
CCCCGGACCCCAGCCCTCAGCCCCACATCCCTGGGGCCCCAGCCCACACCCCTGGCAGGC
CCCAAGCCCCCCACCAACTTCCTGGATGGCATCGTGGATTTCTTCCGCCAGTATGTGATG
CTCATCGCCGTGGTGGGCTCCCTGGTGTTCCTGCTGATGTTTATTGTCTGTGCCGCTGTC
ATCACTCGCCAGAAGCACAAGGCCTCTGCCTACTACCCCTCGTCCTTCCCTAAGAAGAAG
TATGTGGACCAGAGTGACCGGGCCGGGGGCCCCCGAGCCTTCAGCGAGGTCCCCGACAGG
GCCCCCGACGGCAGGCCCGAGGAGGCCCGGGATTCCTCCCAGCAGCTCCAGGCTGACATC
CTTGCCGCCACACAGAACCTCAAGTCTCCCGCTAGGGCCACCTTGGGCGGTGGAGACGGA
GCCCGGATGATGGAGGGCAAGTCAGAGGAAGAGGAGAAAGGCGCCCGGGAGGTGGACCAG
GACGCCCAGGGACAGGAGGTCCTGGCAGAGGAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UXE5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UXE5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-317, - strand, RNAz p=0.809187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-317, - strand, RNAz p=0.809187

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-695, gnl|bosTau2|chr17 (34918564-34917872)
               

               
               3-695, gnl|Hg17|chr12 (107488640-107487940)
               

               
               3-695, gnl|Mm7|chr5 (113017605-113016913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-695, gnl|bosTau2|chr17 (34918564-34917872)
               

               
               3-695, gnl|Hg17|chr12 (107488640-107487940)
               

               
               3-695, gnl|Mm7|chr5 (113017605-113016913)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	3-695, gnl\|bosTau2\|chr17 (34918564-34917872)
	3-695, gnl\|Hg17\|chr12 (107488640-107487940)
	3-695, gnl\|Mm7\|chr5 (113017605-113016913)