Ss1.1-Ova1-OVRM10080A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGGACGCCGGCCTGCCTAGAGCCTCTCTCCCGCGCCAGCCGCTTCCCGCATGCTG CCGGCCCCTCCCTGAGCGGCGGCGGCGAGGCCTGAGGGACGTGCGCGGGGACTCCTCCGG ATCGAGACTTCGCGGCGCCCGCTCTTCCTCTTGTAGTGCCGGTGCGCGGCCGTCTCGGCG GGCGGGATGGCGACGGTGGCCCCGGGGAGCGGCCGCTCATCCGCGCCCCGGCTGCTCCTG CTCTTGCTCCTGCTCCTTCCGCTGCCGTGGGCCCCGGCCGGCGTCCGGGCTGTTCCCGAC GAGGACCTCAGCCACCGGAACAAGGAGCCTCCGGCGCCAGCTCAGCAGCTGCAGCCGCAA CCCGCGGCTGCGCAGGGCCCCGAGCCGGCCCGGGCCGAGAAAGTATTTACACCAGCTTCT CCAGTTCATACCAATAAAGAAGATCCAGCTACCCAAACTAATTTGGGATTTATCCATGCA TTTGTGGCTGCCATATCAGTTATCATTGTATCTGAACTGGGTGACAAGACATTTTTTATA GCAGCCATTATGGCAATGCGCTATAACCGCTTGACCGTGCTGGCTGGTGCTATGCTTGCC TTGGGCTTAATGACGTGCTTATCAGTTTTGTTTGGCTACGCCACCACAGTCATCCCCAGA CTGTATACATACTATGTTTCCACGGCATTGTTTGCCATTTTCGGCATCAGGATGCTTCGG GAAGGCTTAAAGATGAGTCCAGATGAAGGTCAAGAAGAACTAGAAGAAGTTCAAGCAGAG TTAAAGAAAAAAGATGAAGAATTTCAACGAACCAAACTCTTAAATGGACCAGGAGATGTT GAAACGGGTACAAGCACAACAATACCTCAAAAAAAGTGGCTGCATTTTATTTCACCCATC TTTGTTCAAGCTCTTACATTAACATTCTTAGCAGAATGGGGTGACCGCTCTCAGCTAACT ACGATTGTCCTGGCAGCTAGAGAGGATCCCTACGGTGTGGCTGTGGGCGGGGCGGTGGGA CACTGCTTATGCACCGGACTGGCAGTGATTGGAGGAAGAATGGTAGCCCAGAAAATCTCT GTCAGAACTGTGACAATCATAGGAGGCATCGTATTTTTGGCGTTTGCATTTTCTGCACTA TTTATAAGTCCGGATTCTGGTTTTTAACAAGCTATTTTCCTTTGTATTTTAGTTTTAAGA TAGGTAACTCGATGTACATATGTATATTATAACTAAAAGTGGTGGAAACACTGTATTTTG TAGCATCAATTTGTGAGTTTGACCCATTTAATGAAAGTATTATGTCCCAAAGAAATAATC ACTGATTTTATTTGCAACATGAATTTTTAAAAGAAACCTGTTATCTAAAGCGTGGATTTT TTTCTTCCTCCAGCACAATTAGGTTAACATGGTCTGCATTTTTCAAGTTTTTGGTTCGGG CGAGGGGTGGGCAGTGGACAGAGCCACTGGGCATTGGGGTCTGTCTGCACTAGATTTGCT TTCAGCTGACCCATTTTTAAGGAATTTACCATTCTTCTCCTGCATCACTGAGGTGCTTTA AGTGGTTTACCTTAATTTTTCTTGGGGGAAGAATGAATGAATTTCTCTTTTAAAGTATTT TCTGGAATTGGTAAGCAGTGATTTAATCAGAAGTCTTTTCAGAAAGTATTACTGTTGATA ACATGATAAGATTTGTTTGCCAGGTCCAGTCTTCCTCTTTTTAATTGGGTAGGAAACCCA ATATAATAACAGTCAATATTTGACCATGCGGACTTACCAAATTAAAAGAGAATACTATGA GTGTATTCATATTTTTTCTATATTGAATAGAAAAATGTAACAGACACAACAGAAATAAAA GTGATATGACCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGGACGCCGGCCTGCCTAGAGCCTCTCTCCCGCGCCAGCCGCTTCCCGCATGCTG CCGGCCCCTCCCTGAGCGGCGGCGGCGAGGCCTGAGGGACGTGCGCGGGGACTCCTCCGG ATCGAGACTTCGCGGCGCCCGCTCTTCCTCTTGTAGTGCCGGTGCGCGGCCGTCTCGGCG GGCGGGATGGCGACGGTGGCCCCGGGGAGCGGCCGCTCATCCGCGCCCCGGCTGCTCCTG CTCTTGCTCCTGCTCCTTCCGCTGCCGTGGGCCCCGGCCGGCGTCCGGGCTGTTCCCGAC GAGGACCTCAGCCACCGGAACAAGGAGCCTCCGGCGCCAGCTCAGCAGCTGCAGCCGCAA CCCGCGGCTGCGCAGGGCCCCGAGCCGGCCCGGGCCGAGAAAGTATTTACACCAGCTTCT CCAGTTCATACCAATAAAGAAGATCCAGCTACCCAAACTAATTTGGGATTTATCCATGCA TTTGTGGCTGCCATATCAGTTATCATTGTATCTGAACTGGGTGACAAGACATTTTTTATA GCAGCCATTATGGCAATGCGCTATAACCGCTTGACCGTGCTGGCTGGTGCTATGCTTGCC TTGGGCTTAATGACGTGCTTATCAGTTTTGTTTGGCTACGCCACCACAGTCATCCCCAGA CTGTATACATACTATGTTTCCACGGCATTGTTTGCCATTTTCGGCATCAGGATGCTTCGG GAAGGCTTAAAGATGAGTCCAGATGAAGGTCAAGAAGAACTAGAAGAAGTTCAAGCAGAG TTAAAGAAAAAAGATGAAGAATTTCAACGAACCAAACTCTTAAATGGACCAGGAGATGTT GAAACGGGTACAAGCACAACAATACCTCAAAAAAAGTGGCTGCATTTTATTTCACCCATC TTTGTTCAAGCTCTTACATTAACATTCTTAGCAGAATGGGGTGACCGCTCTCAGCTAACT ACGATTGTCCTGGCAGCTAGAGAGGATCCCTACGGTGTGGCTGTGGGCGGGGCGGTGGGA CACTGCTTATGCACCGGACTGGCAGTGATTGGAGGAAGAATGGTAGCCCAGAAAATCTCT GTCAGAACTGTGACAATCATAGGAGGCATCGTATTTTTGGCGTTTGCATTTTCTGCACTA TTTATAAGTCCGGATTCTGGTTTTTAACAAGCTATTTTCCTTTGTATTTTAGTTTTAAGA TAGGTAACTCGATGTACATATGTATATTATAACTAAAAGTGGTGGAAACACTGTATTTTG TAGCATCAATTTGTGAGTTTGACCCATTTAATGAAAGTATTATGTCCCAAAGAAATAATC ACTGATTTTATTTGCAACATGAATTTTTAAAAGAAACCTGTTATCTAAAGCGTGGATTTT TTTCTTCCTCCAGCACAATTAGGTTAACATGGTCTGCATTTTTCAAGTTTTTGGTTCGGG CGAGGGGTGGGCAGTGGACAGAGCCACTGGGCATTGGGGTCTGTCTGCACTAGATTTGCT TTCAGCTGACCCATTTTTAAGGAATTTACCATTCTTCTCCTGCATCACTGAGGTGCTTTA AGTGGTTTACCTTAATTTTTCTTGGGGGAAGAATGAATGAATTTCTCTTTTAAAGTATTT TCTGGAATTGGTAAGCAGTGATTTAATCAGAAGTCTTTTCAGAAAGTATTACTGTTGATA ACATGATAAGATTTGTTTGCCAGGTCCAGTCTTCCTCTTTTTAATTGGGTAGGAAACCCA ATATAATAACAGTCAATATTTGACCATGCGGACTTACCAAATTAAAAGAGAATACTATGA GTGTATTCATATTTTTTCTATATTGAATAGAAAAATGTAACAGACACAACAGAAATAAAA GTGATATGACCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 684-801, + strand, RNAz p=0.935421 | |
| 890-985, - strand, RNAz p=0.692114 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 684-801, + strand, RNAz p=0.935421 | |
| 890-985, - strand, RNAz p=0.692114 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 8-399, gnl|bosTau2|chr6 (39149072-39148688) | |
| 8-399, gnl|Hg17|chr4 (56103103-56103491) | |
| 8-399, gnl|Mm7|chr5 (76116305-76116675) | |
| 623-801, gnl|bosTau2|chr6 (39128775-39128597) | |
| 623-801, gnl|Hg17|chr4 (56124164-56124342) | |
| 623-801, gnl|Mm7|chr5 (76136427-76136605) | |
| 802-985, gnl|bosTau2|chr6 (39128061-39127878) | |
| 802-985, gnl|canFam2|chr13 (50610184-50610423) | |
| 802-985, gnl|danRer3|chr20 (21632818-21633029) | |
| 802-985, gnl|dasNov1|scaffold_31404 (6966-6725) | |
| 802-985, gnl|echTel1|scaffold_283070 (102480-102265) | |
| 802-985, gnl|fr1|chrUn (178427080-178427314) | |
| 802-985, gnl|galGal2|chr4 (65604502-65604292) | |
| 802-985, gnl|hg17|chr4 (56124880-56125114) | |
| 802-985, gnl|Hg17|chr4 (56124898-56125081) | |
| 802-985, gnl|loxAfr1|scaffold_49852 (4495-4258) | |
| 802-985, gnl|mm7|chr5 (76136946-76137167) | |
| 802-985, gnl|Mm7|chr5 (76136960-76137140) | |
| 802-985, gnl|monDom2|scaffold_26 (19184748-19184996) | |
| 802-985, gnl|oryCun1|scaffold_162909 (4434-4225) | |
| 802-985, gnl|panTro1|chr3 (90517358-90517124) | |
| 802-985, gnl|rheMac2|chr5 (73977552-73977318) | |
| 802-985, gnl|rn3|chr14 (34270433-34270212) | |
| 802-985, gnl|tetNig1|chr1_random (2128412-2128602) | |
| 1087-1689, gnl|bosTau2|chr6 (39123279-39122654) | |
| 1087-1689, gnl|Hg17|chr4 (56132467-56133037) | |
| 1087-1689, gnl|Mm7|chr5 (76140829-76141359) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-399, gnl|bosTau2|chr6 (39149072-39148688) | |
| 8-399, gnl|Hg17|chr4 (56103103-56103491) | |
| 8-399, gnl|Mm7|chr5 (76116305-76116675) | |
| 623-801, gnl|bosTau2|chr6 (39128775-39128597) | |
| 623-801, gnl|Hg17|chr4 (56124164-56124342) | |
| 623-801, gnl|Mm7|chr5 (76136427-76136605) | |
| 802-985, gnl|bosTau2|chr6 (39128061-39127878) | |
| 802-985, gnl|canFam2|chr13 (50610184-50610423) | |
| 802-985, gnl|danRer3|chr20 (21632818-21633029) | |
| 802-985, gnl|dasNov1|scaffold_31404 (6966-6725) | |
| 802-985, gnl|echTel1|scaffold_283070 (102480-102265) | |
| 802-985, gnl|fr1|chrUn (178427080-178427314) | |
| 802-985, gnl|galGal2|chr4 (65604502-65604292) | |
| 802-985, gnl|hg17|chr4 (56124880-56125114) | |
| 802-985, gnl|Hg17|chr4 (56124898-56125081) | |
| 802-985, gnl|loxAfr1|scaffold_49852 (4495-4258) | |
| 802-985, gnl|mm7|chr5 (76136946-76137167) | |
| 802-985, gnl|Mm7|chr5 (76136960-76137140) | |
| 802-985, gnl|monDom2|scaffold_26 (19184748-19184996) | |
| 802-985, gnl|oryCun1|scaffold_162909 (4434-4225) | |
| 802-985, gnl|panTro1|chr3 (90517358-90517124) | |
| 802-985, gnl|rheMac2|chr5 (73977552-73977318) | |
| 802-985, gnl|rn3|chr14 (34270433-34270212) | |
| 802-985, gnl|tetNig1|chr1_random (2128412-2128602) | |
| 1087-1689, gnl|bosTau2|chr6 (39123279-39122654) | |
| 1087-1689, gnl|Hg17|chr4 (56132467-56133037) | |
| 1087-1689, gnl|Mm7|chr5 (76140829-76141359) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| tes (0.415628) | |
| ret (0.3862) | |
| mga (0.32041) | |
| lin (0.291206) | |
| csk (0.281492) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| ret (0.3862) | |
| mga (0.32041) | |
| lin (0.291206) | |
| csk (0.281492) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| che (0.136314) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) |