Non-Coding RNA Search

Ss1.1-Ova1-OVRM10080B05.5.5

Sequence:


               
               TTCCCCGGCTGTAGCTGGACAAGGCTGTAGTGCGCGCGCCGCGGCGCCCCTCGAGCGGGA
GGGACCGGTTGACTGCAGTAGAGTCGGAGGGAATCCCGGGCTGCGGAGCTGCGCCGGCGG
GGAAGCCCTTCGGTTTGCTGTGCACCAAGAGAGTAAGGCGGGGGGTCTCCCGAGACCGCC
ACCGGCCCCCTCGGTCCCGACAGGACCGCGCGGAGCGCGCCCCCCGAAGGCAGCCCCGGG
CCCGTGGCCCTGACTTGGTCCCGCGCGCCGGGCGCCGGGCAGCTCAGAGGGAGGAAACAA
GAGGGGCCGCCCTCCCCGCGGAGTTGGAAGCGCTTTCGCTCGGTCCAAAATGCCCAAGAA
GAAGCCGACGCCCATCCAGCTGAACCCGGCCCCCGACGGCTCCGCGGTTAACGGGACCAG
CTCGGCGGAGACCAACCTGGAGGCCTTGCAGAAGAAGCTGGAGGAGCTGGAGCTCGATGA
ACAGCAGCGGAAGCGCCTCGAGGCCTTTCTTACCCAGAAGCAGAAGGTGGGGGAACTGAA
GGATGACGACTTCGAGAAGATCAGTGAGCTGGGTGCCGGCAATGGAGGTGTGGTGTTCAA
GGTCTCCCACAAGCCGTCCGGCCTGGTCATGGCCCGAAAGCTAATTCACCTGGAGATCAA
ACCTGCAATCCGGAATCAGATTATAAGGGAGCTGCAGGTTCTACATGAGTGCAATTCCCC
CTACATTGTGGGCTTCTACGGCGCATTCTACAGCGATGGCGAGATCAGTATCTGCATGGA
GCACATGGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCGGCTGTAGCTGGACAAGGCTGTAGTGCGCGCGCCGCGGCGCCCCTCGAGCGGGA
GGGACCGGTTGACTGCAGTAGAGTCGGAGGGAATCCCGGGCTGCGGAGCTGCGCCGGCGG
GGAAGCCCTTCGGTTTGCTGTGCACCAAGAGAGTAAGGCGGGGGGTCTCCCGAGACCGCC
ACCGGCCCCCTCGGTCCCGACAGGACCGCGCGGAGCGCGCCCCCCGAAGGCAGCCCCGGG
CCCGTGGCCCTGACTTGGTCCCGCGCGCCGGGCGCCGGGCAGCTCAGAGGGAGGAAACAA
GAGGGGCCGCCCTCCCCGCGGAGTTGGAAGCGCTTTCGCTCGGTCCAAAATGCCCAAGAA
GAAGCCGACGCCCATCCAGCTGAACCCGGCCCCCGACGGCTCCGCGGTTAACGGGACCAG
CTCGGCGGAGACCAACCTGGAGGCCTTGCAGAAGAAGCTGGAGGAGCTGGAGCTCGATGA
ACAGCAGCGGAAGCGCCTCGAGGCCTTTCTTACCCAGAAGCAGAAGGTGGGGGAACTGAA
GGATGACGACTTCGAGAAGATCAGTGAGCTGGGTGCCGGCAATGGAGGTGTGGTGTTCAA
GGTCTCCCACAAGCCGTCCGGCCTGGTCATGGCCCGAAAGCTAATTCACCTGGAGATCAA
ACCTGCAATCCGGAATCAGATTATAAGGGAGCTGCAGGTTCTACATGAGTGCAATTCCCC
CTACATTGTGGGCTTCTACGGCGCATTCTACAGCGATGGCGAGATCAGTATCTGCATGGA
GCACATGGATGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80XD2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80XD2_MOUSE

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               52-430, gnl|bosTau2|chr10 (7120407-7120034)
               

               
               52-430, gnl|Hg17|chr15 (64466392-64466820)
               


               
               639-788, gnl|bosTau2|chr10 (7082228-7082079)
               

               
               639-788, gnl|Hg17|chr15 (64516136-64516285)
               

               
               639-788, gnl|Mm7|chr9 (64240913-64240764)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-430, gnl|bosTau2|chr10 (7120407-7120034)
               

               
               52-430, gnl|Hg17|chr15 (64466392-64466820)
               


               
               639-788, gnl|bosTau2|chr10 (7082228-7082079)
               

               
               639-788, gnl|Hg17|chr15 (64516136-64516285)
               

               
               639-788, gnl|Mm7|chr9 (64240913-64240764)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	52-430, gnl\|bosTau2\|chr10 (7120407-7120034)
	52-430, gnl\|Hg17\|chr15 (64466392-64466820)

	639-788, gnl\|bosTau2\|chr10 (7082228-7082079)
	639-788, gnl\|Hg17\|chr15 (64516136-64516285)
	639-788, gnl\|Mm7\|chr9 (64240913-64240764)