Non-Coding RNA Search

Ss1.1-Ova1-OVRM10081C08.5

Sequence:


               
               TCGCCGCTTCCCGCCCCCGAGCCGGAGCCGGTTCCGAGCGGAGTGGAGTGGAGGTCTGCC
CCGGAGAGGAGCTGGCTGAGCGGGCGCCGAGCCCCCGCCATGGCCCGGAACACATTGTCC
TCGCGCTTCCGTCGAGTGGACATCGATGAATTTGATGAGAACAAATTCGTGGACGAGCAG
GAGGAGGCGGCGGCGGCGGCGGCCGAGCCAGGCCCGGACCCTAGCGAAGTGGACGGGCTC
CTGCGGCAAGGGGACATGCTTCGGGCATTTCACGCAGCCTTACGGAACTCCCCCGTCAAC
ACCAAGAATCAAGCTGTGAAGGAACGGGCCCAGGGTGTGGTGCTGAAAGTGCTTACAAAT
TTTAAGAGCAGCGAAATTGAGCAGGCTGTGCAGTCACTGGACAGAAATGGCATCGACTTG
CTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCCACAGAAAACAGCAGCGCAGTGTTA
CTCCAGTGGCATGAAAAGGCATTAGCAGTAGGAGGACTAGGCTCCATTATAAGAGTTCTT
ACAGCAAGAAAGACTGTTTAAAACAAAAACAAACAAACAAAAAAGACTCATGTTACCTTG
AGAAGAATTTTGGATGCACAGGCTGGCGAAGAAGGGATTGACAATCGGCCATCTTCCTAG
CAACTCCCAACTAAACAATTTCAGGACATGCATCCGCTGAAGTGTATTTTATTTTCAAGG
TGGAGGGAGAAATCGTCTTACTGTTTCCTAAATCCTTTGCAGGATCTGATAGTCTATGCC
TTTGTCCGCGAGTAATGCAGAACTGACATTGTGACTGTCTGCCAGAGTGGCTGGCCATCA
TTGGTCGGTCAGGTGTACCTGTGTGCACTGCCTGTTAAAAACAGGGGAGGGATGATTTGG
GCAGGTGCAGATCCAAGGGCTGCGGTAAAGGGAGAGCTTGGTTTTTTGAAGTGGAAAACC
CCCGAGGGTTTGTACAGACAGCCCATCCTCCCAGAGAAGGCGGGCTCTCTTGGGTTCATT
GTAAAGTGCCTGCTGCATCAATAAAGCTCTTGGCTTATTAGTAAAAAAAAAAAAAAAAAA
TTTAGTGTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCGCTTCCCGCCCCCGAGCCGGAGCCGGTTCCGAGCGGAGTGGAGTGGAGGTCTGCC
CCGGAGAGGAGCTGGCTGAGCGGGCGCCGAGCCCCCGCCATGGCCCGGAACACATTGTCC
TCGCGCTTCCGTCGAGTGGACATCGATGAATTTGATGAGAACAAATTCGTGGACGAGCAG
GAGGAGGCGGCGGCGGCGGCGGCCGAGCCAGGCCCGGACCCTAGCGAAGTGGACGGGCTC
CTGCGGCAAGGGGACATGCTTCGGGCATTTCACGCAGCCTTACGGAACTCCCCCGTCAAC
ACCAAGAATCAAGCTGTGAAGGAACGGGCCCAGGGTGTGGTGCTGAAAGTGCTTACAAAT
TTTAAGAGCAGCGAAATTGAGCAGGCTGTGCAGTCACTGGACAGAAATGGCATCGACTTG
CTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCCACAGAAAACAGCAGCGCAGTGTTA
CTCCAGTGGCATGAAAAGGCATTAGCAGTAGGAGGACTAGGCTCCATTATAAGAGTTCTT
ACAGCAAGAAAGACTGTTTAAAACAAAAACAAACAAACAAAAAAGACTCATGTTACCTTG
AGAAGAATTTTGGATGCACAGGCTGGCGAAGAAGGGATTGACAATCGGCCATCTTCCTAG
CAACTCCCAACTAAACAATTTCAGGACATGCATCCGCTGAAGTGTATTTTATTTTCAAGG
TGGAGGGAGAAATCGTCTTACTGTTTCCTAAATCCTTTGCAGGATCTGATAGTCTATGCC
TTTGTCCGCGAGTAATGCAGAACTGACATTGTGACTGTCTGCCAGAGTGGCTGGCCATCA
TTGGTCGGTCAGGTGTACCTGTGTGCACTGCCTGTTAAAAACAGGGGAGGGATGATTTGG
GCAGGTGCAGATCCAAGGGCTGCGGTAAAGGGAGAGCTTGGTTTTTTGAAGTGGAAAACC
CCCGAGGGTTTGTACAGACAGCCCATCCTCCCAGAGAAGGCGGGCTCTCTTGGGTTCATT
GTAAAGTGCCTGCTGCATCAATAAAGCTCTTGGCTTATTAGTAAAAAAAAAAAAAAAAAA
TTTAGTGTATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R4M1_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R4M1_PONPY

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               82-201, + strand, RNAz p=0.509609
               

               
               742-838, - strand, RNAz p=0.578192
               

               
               879-993, + strand, RNAz p=0.999507

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, + strand, RNAz p=0.509609
               

               
               742-838, - strand, RNAz p=0.578192
               

               
               879-993, + strand, RNAz p=0.999507

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030978, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030978, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               3-249, gnl|bosTau2|chr11 (73169755-73170001)
               

               
               3-249, gnl|Hg17|chr9 (124711028-124711273)
               

               
               3-249, gnl|Mm7|chr2 (39015418-39015656)
               


               
               497-1063, gnl|bosTau2|chr11 (73176418-73176970)
               

               
               497-1063, gnl|canFam2|chr9 (61483500-61483132)
               

               
               497-1063, gnl|dasNov1|scaffold_120341 (762-404)
               

               
               497-1063, gnl|echTel1|scaffold_51924 (376-689)
               

               
               497-1063, gnl|hg17|chr17 (6199193-6199560)
               

               
               497-1063, gnl|Hg17|chr9 (124718709-124719244)
               

               
               497-1063, gnl|loxAfr1|scaffold_146823 (964-601)
               

               
               497-1063, gnl|mm7|chr2 (39022432-39022784)
               

               
               497-1063, gnl|Mm7|chr2 (39022367-39022899)
               

               
               497-1063, gnl|monDom2|scaffold_6 (66517952-66517536)
               

               
               497-1063, gnl|oryCun1|scaffold_208845 (47098-46759)
               

               
               497-1063, gnl|panTro1|chr19_random (50226938-50227296)
               

               
               497-1063, gnl|rheMac2|chr16 (6070559-6070932)
               

               
               497-1063, gnl|rn3|chr3 (18697887-18698238)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-249, gnl|bosTau2|chr11 (73169755-73170001)
               

               
               3-249, gnl|Hg17|chr9 (124711028-124711273)
               

               
               3-249, gnl|Mm7|chr2 (39015418-39015656)
               


               
               497-1063, gnl|bosTau2|chr11 (73176418-73176970)
               

               
               497-1063, gnl|canFam2|chr9 (61483500-61483132)
               

               
               497-1063, gnl|dasNov1|scaffold_120341 (762-404)
               

               
               497-1063, gnl|echTel1|scaffold_51924 (376-689)
               

               
               497-1063, gnl|hg17|chr17 (6199193-6199560)
               

               
               497-1063, gnl|Hg17|chr9 (124718709-124719244)
               

               
               497-1063, gnl|loxAfr1|scaffold_146823 (964-601)
               

               
               497-1063, gnl|mm7|chr2 (39022432-39022784)
               

               
               497-1063, gnl|Mm7|chr2 (39022367-39022899)
               

               
               497-1063, gnl|monDom2|scaffold_6 (66517952-66517536)
               

               
               497-1063, gnl|oryCun1|scaffold_208845 (47098-46759)
               

               
               497-1063, gnl|panTro1|chr19_random (50226938-50227296)
               

               
               497-1063, gnl|rheMac2|chr16 (6070559-6070932)
               

               
               497-1063, gnl|rn3|chr3 (18697887-18698238)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cty (0.41632)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	82-201, + strand, RNAz p=0.509609
	742-838, - strand, RNAz p=0.578192
	879-993, + strand, RNAz p=0.999507

	3-249, gnl\|bosTau2\|chr11 (73169755-73170001)
	3-249, gnl\|Hg17\|chr9 (124711028-124711273)
	3-249, gnl\|Mm7\|chr2 (39015418-39015656)

	497-1063, gnl\|bosTau2\|chr11 (73176418-73176970)
	497-1063, gnl\|canFam2\|chr9 (61483500-61483132)
	497-1063, gnl\|dasNov1\|scaffold_120341 (762-404)
	497-1063, gnl\|echTel1\|scaffold_51924 (376-689)
	497-1063, gnl\|hg17\|chr17 (6199193-6199560)
	497-1063, gnl\|Hg17\|chr9 (124718709-124719244)
	497-1063, gnl\|loxAfr1\|scaffold_146823 (964-601)
	497-1063, gnl\|mm7\|chr2 (39022432-39022784)
	497-1063, gnl\|Mm7\|chr2 (39022367-39022899)
	497-1063, gnl\|monDom2\|scaffold_6 (66517952-66517536)
	497-1063, gnl\|oryCun1\|scaffold_208845 (47098-46759)
	497-1063, gnl\|panTro1\|chr19_random (50226938-50227296)
	497-1063, gnl\|rheMac2\|chr16 (6070559-6070932)
	497-1063, gnl\|rn3\|chr3 (18697887-18698238)

	cty (0.41632)
	cag (0.302389)
	hyp (0.285673)
	lnt (0.284616)
	hea (0.204499)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	ski (0.146735)
	pla (0.133672)
	cly (0.120642)
	ebs (0.118301)
	jej (0.0989218)