Non-Coding RNA Search

Ss1.1-Ova1-OVRM10082H04.5

Sequence:


               
               GGAGACCAGAACCCAGGCTCTCTCTTCTGACTTGCAACAATCTTACAGGGCCACCCTCTC
CAGGTTCGCCCGCTCATCCAGTCTGCTCCCCAGTGTTTTCTGGTTCCTGGCAAGTATTTC
TCGGTGCCCAGGTTTAGCAATGGCTGGATGGAGCTGCCTTGTGACAGGAGGAGGAGGGTT
TCTGGGTCAGAGGATCGTCCACTTGTTGCTGGAGGAGAAGGATCTGCAGGAGATCCGGGT
ACTAGACAAAGTCTTCAAACCAGAAGTTCGGGAGGAATTTTCTAAGCTCCAGAGCAAGAT
CAAGCTGACCATGCTGGAGGGGGACATCCTGGATGAGCAGTGCCTGAAGGGAGCCTGCCA
GGGGGCCTCCGTGGTCATCCACACTGCCTCTATCATCGACGTGGTCAACGCCGTTGGGCG
AGAGACCGTCATGAAGGTCAATGTGAAAGGTACCCAGCTCCTGCTGGAGGCCTGTGTCCA
GGCCAGCGTGCCGGTCTTCATCCACACCAGCAGCATAGAGGTGGCTGGACCCAACTCCTA
CAGGGAGGTCATCCAGAACGCCTGCGAAGAAGACCGTCTCGAGACGGCCTGGTCCGCGCC
GTACCCCTTGAGCAAAAAGCTGGCTGAGAAGGCTGTGCTGGAGGCTAACGGCTGGGCTCT
TCAGAACGGTGGTACCCTGCACACGTGTGCTCTGAGGCCCATGTATATCTACGGGGAGGG
GAGCCCATTCATCTTTGCCCACATGAACAAGGCCCTGGAGAACAATGGCGTCCTGACACA
CAACTCCAAGTTCTCCAGAGTCAACCCCGTCTACGTCGGCAACGTGGCCTGGGCCCACAT
TCTGGCCTTGAGAGCCCTTCGGGACCCCAGAAAGGCCCTCAGCGTCCAGGGACAGTTCTA
CTACGTCGCAGACGACACACCTCCCCAAAGCTACGATGACCTCAATTACACGTTGGGCAA
GGAATGGGGCTTCTGCCTTGATTCCAGAAGGAGCCTTCCGCCCTCTCTGAGGTACTGGCT
GGCCTTCCTGCTGGAAATAGTGAGCTTCCTGCTGAGTCCAATTTACAATTATCAGCCCCC
CTTCAATCGCCACTTCGTGACCCTGTGCAACAGCGTGTTCACCGTCTCCTACAAGAAGGC
GCAGCGAGATCTGGGCTACGAGCCGCTCTTCACCTGGGAGGAAGCCAAGCAGAAAACCAA
GGCGTGGGTTGGCTCCCTGGTGAAGCAGCACAAGGAGGCGCTGAAAACCAAGACTCACTG
ACCTGGGCTGATGACCACGTGGATGTGGGTGTGAGGGGAACTCCGTCGAGCTGTTCCCCC
GCCGCTGCCCCCCCGCCCCCCACCGCCACTGGCTTCATACAGAAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACCAGAACCCAGGCTCTCTCTTCTGACTTGCAACAATCTTACAGGGCCACCCTCTC
CAGGTTCGCCCGCTCATCCAGTCTGCTCCCCAGTGTTTTCTGGTTCCTGGCAAGTATTTC
TCGGTGCCCAGGTTTAGCAATGGCTGGATGGAGCTGCCTTGTGACAGGAGGAGGAGGGTT
TCTGGGTCAGAGGATCGTCCACTTGTTGCTGGAGGAGAAGGATCTGCAGGAGATCCGGGT
ACTAGACAAAGTCTTCAAACCAGAAGTTCGGGAGGAATTTTCTAAGCTCCAGAGCAAGAT
CAAGCTGACCATGCTGGAGGGGGACATCCTGGATGAGCAGTGCCTGAAGGGAGCCTGCCA
GGGGGCCTCCGTGGTCATCCACACTGCCTCTATCATCGACGTGGTCAACGCCGTTGGGCG
AGAGACCGTCATGAAGGTCAATGTGAAAGGTACCCAGCTCCTGCTGGAGGCCTGTGTCCA
GGCCAGCGTGCCGGTCTTCATCCACACCAGCAGCATAGAGGTGGCTGGACCCAACTCCTA
CAGGGAGGTCATCCAGAACGCCTGCGAAGAAGACCGTCTCGAGACGGCCTGGTCCGCGCC
GTACCCCTTGAGCAAAAAGCTGGCTGAGAAGGCTGTGCTGGAGGCTAACGGCTGGGCTCT
TCAGAACGGTGGTACCCTGCACACGTGTGCTCTGAGGCCCATGTATATCTACGGGGAGGG
GAGCCCATTCATCTTTGCCCACATGAACAAGGCCCTGGAGAACAATGGCGTCCTGACACA
CAACTCCAAGTTCTCCAGAGTCAACCCCGTCTACGTCGGCAACGTGGCCTGGGCCCACAT
TCTGGCCTTGAGAGCCCTTCGGGACCCCAGAAAGGCCCTCAGCGTCCAGGGACAGTTCTA
CTACGTCGCAGACGACACACCTCCCCAAAGCTACGATGACCTCAATTACACGTTGGGCAA
GGAATGGGGCTTCTGCCTTGATTCCAGAAGGAGCCTTCCGCCCTCTCTGAGGTACTGGCT
GGCCTTCCTGCTGGAAATAGTGAGCTTCCTGCTGAGTCCAATTTACAATTATCAGCCCCC
CTTCAATCGCCACTTCGTGACCCTGTGCAACAGCGTGTTCACCGTCTCCTACAAGAAGGC
GCAGCGAGATCTGGGCTACGAGCCGCTCTTCACCTGGGAGGAAGCCAAGCAGAAAACCAA
GGCGTGGGTTGGCTCCCTGGTGAAGCAGCACAAGGAGGCGCTGAAAACCAAGACTCACTG
ACCTGGGCTGATGACCACGTGGATGTGGGTGTGAGGGGAACTCCGTCGAGCTGTTCCCCC
GCCGCTGCCCCCCCGCCCCCCACCGCCACTGGCTTCATACAGAAAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51592145|ref|NP_001004049.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51592145|ref|NP_001004049.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               56-284, gnl|bosTau2|chr3 (20220353-20220125)
               

               
               56-284, gnl|Hg17|chr1 (119669998-119670226)
               

               
               56-284, gnl|Mm7|chr3 (98653459-98653255)
               


               
               448-1267, gnl|bosTau2|chr3 (20211832-20211013)
               

               
               448-1267, gnl|Hg17|chr1 (119863092-119863924)
               

               
               448-1267, gnl|Mm7|chr3 (98648800-98647998)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-284, gnl|bosTau2|chr3 (20220353-20220125)
               

               
               56-284, gnl|Hg17|chr1 (119669998-119670226)
               

               
               56-284, gnl|Mm7|chr3 (98653459-98653255)
               


               
               448-1267, gnl|bosTau2|chr3 (20211832-20211013)
               

               
               448-1267, gnl|Hg17|chr1 (119863092-119863924)
               

               
               448-1267, gnl|Mm7|chr3 (98648800-98647998)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cov (11.3651)
               

               
               cag (3.47747)
               

               
               pty (0.285429)
               

               
               ute (0.265569)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (11.3651)
               

               
               cag (3.47747)
               

               
               pty (0.285429)
               

               
               ute (0.265569)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               sug (0.127291)

	56-284, gnl\|bosTau2\|chr3 (20220353-20220125)
	56-284, gnl\|Hg17\|chr1 (119669998-119670226)
	56-284, gnl\|Mm7\|chr3 (98653459-98653255)

	448-1267, gnl\|bosTau2\|chr3 (20211832-20211013)
	448-1267, gnl\|Hg17\|chr1 (119863092-119863924)
	448-1267, gnl\|Mm7\|chr3 (98648800-98647998)

	cov (11.3651)
	cag (3.47747)
	pty (0.285429)
	ute (0.265569)
	cli (0.152812)
	pla (0.133672)
	sug (0.127291)