Non-Coding RNA Search

Ss1.1-Ova1-OVRM10083G01.5

Sequence:


               
               GAACCATATAAATGTACCGAATGTGGGAAGGCCTTTAACTGTGGCTATCACCTTACTCAG
CATGAGAGAATTCACACTGGTGAAACGCCTTACAAGTGTAAGGAATGTGGAAAGGCCTTT
ATTTATGGGTCAAGCCTTGTCAAACATGAGCGAATTCATACAGGGGAGAAACCCTATGAG
TGTAAAGAATGTGGGAAAGCCTTCAGTCATGGCCATCAACTTACACAGCATCAGAAAATT
CACGCTGGTGAGAAACCCTCTGAGTGTAAGGAATATGGAAAGGCATGTACCCATGTAAGC
CATCTTCAAGAACAGAGAATCCATACTGTTGGAAAACCTTTTGTGTACAAAGAATGTATA
GAGGCCCCTGTTCAACATTCATTTCTTCCACAGCATGAGGAAAATGCGTGATAAAATTTA
ACATAAGAAAGCCTTTATGGGTCAGTCTTCTGCTTATAGAATATCAAAAGTCATATTAGA
GGTGAATTTGGAAAATGGAAAAACCACTTTTTCTTATTGACCACAAACTACTCAGTGTAG
GTGATTTTTTTACTGGATAGGTCAGTTTCATGAATGCATAGAAACTTACCAATACCATTT
CATCTCTGTCGTACTTCAGATTTATTCTAGGGTACAACTCTGCTTACAGAACATATGAGG
GAGAGCCATTCATCATGGTATGTACCCAACCTGTTATCATCACTATCCCACCTCCTTACT
CCCTGTAAGACACTGGGGAAATTAGCTATGACCCCATGTGCATTATTTGTGAAATGGGGA
TGATCACACCTACCTAATACTGCTGTTGTGATTAAATGAGTTTGGTTCATGTAAACTTCT
TGAACGTGTATCTGGAATATTGTGTAAGCTCAATAAATGTTAGCTGTTGTTCCTGTTACC
ATTAGCATTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCATATAAATGTACCGAATGTGGGAAGGCCTTTAACTGTGGCTATCACCTTACTCAG
CATGAGAGAATTCACACTGGTGAAACGCCTTACAAGTGTAAGGAATGTGGAAAGGCCTTT
ATTTATGGGTCAAGCCTTGTCAAACATGAGCGAATTCATACAGGGGAGAAACCCTATGAG
TGTAAAGAATGTGGGAAAGCCTTCAGTCATGGCCATCAACTTACACAGCATCAGAAAATT
CACGCTGGTGAGAAACCCTCTGAGTGTAAGGAATATGGAAAGGCATGTACCCATGTAAGC
CATCTTCAAGAACAGAGAATCCATACTGTTGGAAAACCTTTTGTGTACAAAGAATGTATA
GAGGCCCCTGTTCAACATTCATTTCTTCCACAGCATGAGGAAAATGCGTGATAAAATTTA
ACATAAGAAAGCCTTTATGGGTCAGTCTTCTGCTTATAGAATATCAAAAGTCATATTAGA
GGTGAATTTGGAAAATGGAAAAACCACTTTTTCTTATTGACCACAAACTACTCAGTGTAG
GTGATTTTTTTACTGGATAGGTCAGTTTCATGAATGCATAGAAACTTACCAATACCATTT
CATCTCTGTCGTACTTCAGATTTATTCTAGGGTACAACTCTGCTTACAGAACATATGAGG
GAGAGCCATTCATCATGGTATGTACCCAACCTGTTATCATCACTATCCCACCTCCTTACT
CCCTGTAAGACACTGGGGAAATTAGCTATGACCCCATGTGCATTATTTGTGAAATGGGGA
TGATCACACCTACCTAATACTGCTGTTGTGATTAAATGAGTTTGGTTCATGTAAACTTCT
TGAACGTGTATCTGGAATATTGTGTAAGCTCAATAAATGTTAGCTGTTGTTCCTGTTACC
ATTAGCATTGCT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-375, gnl|bosTau2|chr18 (51969598-51969965)
               

               
               1-375, gnl|Hg17|chr14 (50008716-50009267)
               

               
               1-375, gnl|Mm7|chr17 (19202529-19202907)
               


               
               2-366, gnl|bosTau2|chr10 (8996674-8996307)
               

               
               2-366, gnl|Hg17|chr19 (42818479-42818028)
               

               
               2-366, gnl|Mm7|chr2 (127310105-127309738)
               


               
               4-336, gnl|bosTau2|chr10 (8996336-8996001)
               

               
               4-336, gnl|Hg17|chr19 (42818057-42817755)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-375, gnl|bosTau2|chr18 (51969598-51969965)
               

               
               1-375, gnl|Hg17|chr14 (50008716-50009267)
               

               
               1-375, gnl|Mm7|chr17 (19202529-19202907)
               


               
               2-366, gnl|bosTau2|chr10 (8996674-8996307)
               

               
               2-366, gnl|Hg17|chr19 (42818479-42818028)
               

               
               2-366, gnl|Mm7|chr2 (127310105-127309738)
               


               
               4-336, gnl|bosTau2|chr10 (8996336-8996001)
               

               
               4-336, gnl|Hg17|chr19 (42818057-42817755)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               thg (0.126791)

	1-375, gnl\|bosTau2\|chr18 (51969598-51969965)
	1-375, gnl\|Hg17\|chr14 (50008716-50009267)
	1-375, gnl\|Mm7\|chr17 (19202529-19202907)

	2-366, gnl\|bosTau2\|chr10 (8996674-8996307)
	2-366, gnl\|Hg17\|chr19 (42818479-42818028)
	2-366, gnl\|Mm7\|chr2 (127310105-127309738)

	4-336, gnl\|bosTau2\|chr10 (8996336-8996001)
	4-336, gnl\|Hg17\|chr19 (42818057-42817755)