Non-Coding RNA Search

Ss1.1-Ova1-OVRM10083H08.5

Sequence:


               
               CCTGCGGCGGCGACAATGATGGACCGGGAGCCAGTGAACCGGGAGGAGGGAGGAGAAGCA
GTGGGTGTCTCCGGAGCTGCGGCCGCCTCGGCGTTCAGGGAATCGTCTCGGCAGATGAGT
AATGACAGAGGCTTTGAAAATGTAGAACTGGGAGTCATAGGAAAAAAGAAGAAAGTCCCA
AGGAGAGTCATCCACTTCGTCAGTGGTGAGACAATGGAAGAATACAGCACAGATGAGGAT
GAGGTCGATGGCCTGGAGAAGAAGGATGTTTTACCCACTGTTGATCCGACAAAACTTACC
TGGGGCCCATACTTATGGTTTTACATGCTTCGTGCTGCCACATCAACCCTCTCAGTATGT
GACTTCCTTGGAGAAAAGATTGCGTCTGTTTTGGGCATCAGCACCCCAAAATACCAGTAT
GCCATCGATGAGTATTACCGGATGAAGAAGGAGGAAGAAGAAGAAGAAGAAGAAAATAGA
ATGTCTGAAGAAGCAGAAAGGCAGTACCAACAAAATAAGATGCAGGCTGATTCCACTGTC
CAGTCAGATCAACCAGAAACACTGGTATCCAGTTCATTTGTGAATCTCAATTTTGAAATG
GAGGGAGATTGTGAAGTAATTATGGAAAGCAAACAAAATCCAGTCCCTGTCCCTCTGTAG
AATGAAATGACTATCAAACTTCTAAGTTTTTTTTTTTAAACCAGAAACTTCACATTCTAT
ATTCTGTGGGACTTAATACAGTTATTTATACTTTAAATTATTAAGTTATCTGCAAAGGAA
AAGTGTTTCTTTATTCTTAGGCTCTATCAAAAGCCAGATTTGAAATTTGGATATTTGTAC
TATGCTTTTAACTGTGTCAAATTAGTACTTTGGTTTTAAAATGATCTTTAAAAAAATTTA
AGGACATTCTAGAGCCCTAACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGGCGGCGACAATGATGGACCGGGAGCCAGTGAACCGGGAGGAGGGAGGAGAAGCA
GTGGGTGTCTCCGGAGCTGCGGCCGCCTCGGCGTTCAGGGAATCGTCTCGGCAGATGAGT
AATGACAGAGGCTTTGAAAATGTAGAACTGGGAGTCATAGGAAAAAAGAAGAAAGTCCCA
AGGAGAGTCATCCACTTCGTCAGTGGTGAGACAATGGAAGAATACAGCACAGATGAGGAT
GAGGTCGATGGCCTGGAGAAGAAGGATGTTTTACCCACTGTTGATCCGACAAAACTTACC
TGGGGCCCATACTTATGGTTTTACATGCTTCGTGCTGCCACATCAACCCTCTCAGTATGT
GACTTCCTTGGAGAAAAGATTGCGTCTGTTTTGGGCATCAGCACCCCAAAATACCAGTAT
GCCATCGATGAGTATTACCGGATGAAGAAGGAGGAAGAAGAAGAAGAAGAAGAAAATAGA
ATGTCTGAAGAAGCAGAAAGGCAGTACCAACAAAATAAGATGCAGGCTGATTCCACTGTC
CAGTCAGATCAACCAGAAACACTGGTATCCAGTTCATTTGTGAATCTCAATTTTGAAATG
GAGGGAGATTGTGAAGTAATTATGGAAAGCAAACAAAATCCAGTCCCTGTCCCTCTGTAG
AATGAAATGACTATCAAACTTCTAAGTTTTTTTTTTTAAACCAGAAACTTCACATTCTAT
ATTCTGTGGGACTTAATACAGTTATTTATACTTTAAATTATTAAGTTATCTGCAAAGGAA
AAGTGTTTCTTTATTCTTAGGCTCTATCAAAAGCCAGATTTGAAATTTGGATATTTGTAC
TATGCTTTTAACTGTGTCAAATTAGTACTTTGGTTTTAAAATGATCTTTAAAAAAATTTA
AGGACATTCTAGAGCCCTAACCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CN024_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CN024_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               113-288, gnl|bosTau2|chr21 (29823063-29823238)
               

               
               113-288, gnl|Hg17|chr14 (34592233-34592408)
               

               
               113-288, gnl|Mm7|chr12 (53098966-53099141)
               


               
               452-924, gnl|bosTau2|chr21 (29830969-29831445)
               

               
               452-924, gnl|Hg17|chr14 (34619977-34620459)
               

               
               452-924, gnl|Mm7|chr12 (53107126-53107644)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-288, gnl|bosTau2|chr21 (29823063-29823238)
               

               
               113-288, gnl|Hg17|chr14 (34592233-34592408)
               

               
               113-288, gnl|Mm7|chr12 (53098966-53099141)
               


               
               452-924, gnl|bosTau2|chr21 (29830969-29831445)
               

               
               452-924, gnl|Hg17|chr14 (34619977-34620459)
               

               
               452-924, gnl|Mm7|chr12 (53107126-53107644)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cte (0.58548)
               

               
               tes (0.415628)
               

               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)
               

               
               lin (0.291206)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	113-288, gnl\|bosTau2\|chr21 (29823063-29823238)
	113-288, gnl\|Hg17\|chr14 (34592233-34592408)
	113-288, gnl\|Mm7\|chr12 (53098966-53099141)

	452-924, gnl\|bosTau2\|chr21 (29830969-29831445)
	452-924, gnl\|Hg17\|chr14 (34619977-34620459)
	452-924, gnl\|Mm7\|chr12 (53107126-53107644)

	cte (0.58548)
	tes (0.415628)
	lin (0.291206)
	sin (0.174948)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)