Ss1.1-Ova1-OVRM10084G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCGGCGTTTCAGTCGCAATGACGGCAGTGGCAATGGCGTTTTTTCACAGAGTGCGCAG CTTGCTGACTCGGCGATTGACAGCCCCCACCAACCTCAGCCTTAGTCTTCACCCCATGAG CTCCTTTACACAAGAGGAGGCTTCCAAAGCTGCTCCCAGCGAAGCTCCAGGTCACAACTA TGAGTCCCTTCAGGTGACAGCTGTCCAGAAACATGTGCTTCATGTGCAGCTAAACCGGCC AGAGAAGAGAAATGCCATGAACAGAGCCTTCTGGAGAGAGATGGTGGTGTGCTTCAACAA GATCGCACAGGACCCTGACTGTCGTGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCAC TTCAGGGATCGACCTTGTGGACATGGCTTCGGACATCTTTCAGCCCCAAGGAGAAGATGT GGCCCGCATCAGCTGGCACCTCCATAATCTCATCTCCAAATACCAGGAGACCTTCAGCGT CATCGAGAAGTGCCCTAAGCCGGTGATCGCTGCCATCCACGGGGGCTGCATTGGTGGAGG AGTGGATCTCATCACTGCCTGTGACATCCGGTACTGTGCCCAGGATGCCTTCTTCCAGGT GAAGGAGGTGGACATAGGTTTGGCAGCGGATGTGGGAACCCTGCAGCGACTGCCCAAAAT CATTGGAAACCAGAGCCTGGTTAACGAGTTGGCCTTCACCGCCCGCAAGATGATGGCTGA CGAGGCCCTGAACAGTGGACTGGTCAGCCGAATCTTCCCAGACCAGGAGGTCCTGCTTGA GGCGGCCCTCGCCCTGGCGGCCGAGATTGCCAGCAAGAGCCCGGTGGCGGTGCAGGGCAC CAAAATCAACCTGCTCTACTCCCGCGACCATTCCGTGGCAGAGGGCCTCAACTACATGAA ATCCTGGAACATGAGCATGCTGCAAACCAAGGACGTCATTAAGTCTGTCCAGGCCGCCAT GGAGAAGAAGGAACTGAAGACCATCACCTTCTCCAAGCTCTGAGAGGCCCCTCGGCCCAG GTCGTGGTCCTGGACCTGGCATTGACCCGCCTCGTGCCTCAACCAGAGAGGGAGGACTGG TGAAGATGGTCACCTCGCTGTCTTCTCAGCCTCCCAGTTTATAACTTTATGACACTGATT TCCTCCTGTCTTATCTTCACTCCGCGAACAATAAAGCAGTGTAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCGGCGTTTCAGTCGCAATGACGGCAGTGGCAATGGCGTTTTTTCACAGAGTGCGCAG CTTGCTGACTCGGCGATTGACAGCCCCCACCAACCTCAGCCTTAGTCTTCACCCCATGAG CTCCTTTACACAAGAGGAGGCTTCCAAAGCTGCTCCCAGCGAAGCTCCAGGTCACAACTA TGAGTCCCTTCAGGTGACAGCTGTCCAGAAACATGTGCTTCATGTGCAGCTAAACCGGCC AGAGAAGAGAAATGCCATGAACAGAGCCTTCTGGAGAGAGATGGTGGTGTGCTTCAACAA GATCGCACAGGACCCTGACTGTCGTGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCAC TTCAGGGATCGACCTTGTGGACATGGCTTCGGACATCTTTCAGCCCCAAGGAGAAGATGT GGCCCGCATCAGCTGGCACCTCCATAATCTCATCTCCAAATACCAGGAGACCTTCAGCGT CATCGAGAAGTGCCCTAAGCCGGTGATCGCTGCCATCCACGGGGGCTGCATTGGTGGAGG AGTGGATCTCATCACTGCCTGTGACATCCGGTACTGTGCCCAGGATGCCTTCTTCCAGGT GAAGGAGGTGGACATAGGTTTGGCAGCGGATGTGGGAACCCTGCAGCGACTGCCCAAAAT CATTGGAAACCAGAGCCTGGTTAACGAGTTGGCCTTCACCGCCCGCAAGATGATGGCTGA CGAGGCCCTGAACAGTGGACTGGTCAGCCGAATCTTCCCAGACCAGGAGGTCCTGCTTGA GGCGGCCCTCGCCCTGGCGGCCGAGATTGCCAGCAAGAGCCCGGTGGCGGTGCAGGGCAC CAAAATCAACCTGCTCTACTCCCGCGACCATTCCGTGGCAGAGGGCCTCAACTACATGAA ATCCTGGAACATGAGCATGCTGCAAACCAAGGACGTCATTAAGTCTGTCCAGGCCGCCAT GGAGAAGAAGGAACTGAAGACCATCACCTTCTCCAAGCTCTGAGAGGCCCCTCGGCCCAG GTCGTGGTCCTGGACCTGGCATTGACCCGCCTCGTGCCTCAACCAGAGAGGGAGGACTGG TGAAGATGGTCACCTCGCTGTCTTCTCAGCCTCCCAGTTTATAACTTTATGACACTGATT TCCTCCTGTCTTATCTTCACTCCGCGAACAATAAAGCAGTGTAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 978-1153, + strand, RNAz p=0.994714 | |
| 1048-1188, + strand, RNAz p=0.982681 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 978-1153, + strand, RNAz p=0.994714 | |
| 1048-1188, + strand, RNAz p=0.982681 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001398, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 75-276, gnl|bosTau2|chr18 (44579197-44578996) | |
| 75-276, gnl|Hg17|chr19 (44013996-44013789) | |
| 75-276, gnl|Mm7|chr7 (25759765-25759969) | |
| 363-490, gnl|bosTau2|chr18 (44573154-44573027) | |
| 363-490, gnl|canFam2|chr1 (117198799-117198627) | |
| 363-490, gnl|danRer3|chr14 (23283196-23283326) | |
| 363-490, gnl|dasNov1|scaffold_158887 (1342-1474) | |
| 363-490, gnl|fr1|chrUn (188063825-188063980) | |
| 363-490, gnl|hg17|chr19 (43999928-44000101) | |
| 363-490, gnl|Hg17|chr19 (44000058-43999931) | |
| 363-490, gnl|loxAfr1|scaffold_114586 (4753-4926) | |
| 363-490, gnl|mm7|chr7 (25763921-25763750) | |
| 363-490, gnl|Mm7|chr7 (25763789-25763916) | |
| 363-490, gnl|monDom2|scaffold_139 (804748-804923) | |
| 363-490, gnl|panTro1|chr20 (40940438-40940611) | |
| 363-490, gnl|rheMac2|chr19 (45160026-45160198) | |
| 363-490, gnl|rn3|chr1 (84014727-84014576) | |
| 363-490, gnl|tetNig1|chr16 (8027645-8027806) | |
| 363-490, gnl|xenTro1|scaffold_1700 (24003-24136) | |
| 898-1188, gnl|bosTau2|chr18 (44571287-44570985) | |
| 898-1188, gnl|canFam2|chr1 (117201362-117201174) | |
| 898-1188, gnl|dasNov1|scaffold_158887 (378-550) | |
| 898-1188, gnl|echTel1|scaffold_308233 (90625-90488) | |
| 898-1188, gnl|hg17|chr19 (43997903-43998080) | |
| 898-1188, gnl|Hg17|chr19 (43998198-43997902) | |
| 898-1188, gnl|loxAfr1|scaffold_40427 (34925-35047) | |
| 898-1188, gnl|mm7|chr7 (25766241-25766115) | |
| 898-1188, gnl|monDom2|scaffold_139 (802269-802441) | |
| 898-1188, gnl|panTro1|chr20 (40928310-40928487) | |
| 898-1188, gnl|rheMac2|chr19 (45158023-45158200) | |
| 898-1188, gnl|rn3|chr1 (84017041-84016941) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-276, gnl|bosTau2|chr18 (44579197-44578996) | |
| 75-276, gnl|Hg17|chr19 (44013996-44013789) | |
| 75-276, gnl|Mm7|chr7 (25759765-25759969) | |
| 363-490, gnl|bosTau2|chr18 (44573154-44573027) | |
| 363-490, gnl|canFam2|chr1 (117198799-117198627) | |
| 363-490, gnl|danRer3|chr14 (23283196-23283326) | |
| 363-490, gnl|dasNov1|scaffold_158887 (1342-1474) | |
| 363-490, gnl|fr1|chrUn (188063825-188063980) | |
| 363-490, gnl|hg17|chr19 (43999928-44000101) | |
| 363-490, gnl|Hg17|chr19 (44000058-43999931) | |
| 363-490, gnl|loxAfr1|scaffold_114586 (4753-4926) | |
| 363-490, gnl|mm7|chr7 (25763921-25763750) | |
| 363-490, gnl|Mm7|chr7 (25763789-25763916) | |
| 363-490, gnl|monDom2|scaffold_139 (804748-804923) | |
| 363-490, gnl|panTro1|chr20 (40940438-40940611) | |
| 363-490, gnl|rheMac2|chr19 (45160026-45160198) | |
| 363-490, gnl|rn3|chr1 (84014727-84014576) | |
| 363-490, gnl|tetNig1|chr16 (8027645-8027806) | |
| 363-490, gnl|xenTro1|scaffold_1700 (24003-24136) | |
| 898-1188, gnl|bosTau2|chr18 (44571287-44570985) | |
| 898-1188, gnl|canFam2|chr1 (117201362-117201174) | |
| 898-1188, gnl|dasNov1|scaffold_158887 (378-550) | |
| 898-1188, gnl|echTel1|scaffold_308233 (90625-90488) | |
| 898-1188, gnl|hg17|chr19 (43997903-43998080) | |
| 898-1188, gnl|Hg17|chr19 (43998198-43997902) | |
| 898-1188, gnl|loxAfr1|scaffold_40427 (34925-35047) | |
| 898-1188, gnl|mm7|chr7 (25766241-25766115) | |
| 898-1188, gnl|monDom2|scaffold_139 (802269-802441) | |
| 898-1188, gnl|panTro1|chr20 (40928310-40928487) | |
| 898-1188, gnl|rheMac2|chr19 (45158023-45158200) | |
| 898-1188, gnl|rn3|chr1 (84017041-84016941) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cli (0.611247) | |
| cly (0.482567) | |
| cbl (0.344392) | |
| pla (0.267344) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| clu (0.119646) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) | |
| cly (0.482567) | |
| cbl (0.344392) | |
| pla (0.267344) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| clu (0.119646) | |
| cty (0.10408) | |
| eje (0.0988338) |