Non-Coding RNA Search

Ss1.1-Ova1-OVRM10085E10.5

Sequence:


               
               CTTGCTGGTGCTTTAAATTCGGAGGTGGACGCGGCCTCGGAGTTCTTATTTGGCCGGAAT
GACTAATGTGGTTTTGCTTTATTTAGAATTGAGGCCTCTAATTCTGAGGCTAGGTGAAAA
TTTTTAATCTGAACACACACCAAGGCCCTCCTGGCGCTTCGCGACTAGAACCCTTAACCT
AGCCAGTCCGCCTAGCCTCGGCTCCGGGAGGGAAGTTGTGATTGGCTGGAACCGCAGGCC
CCCCTCCTCCCGGGCGTCCCGAGCTGTGGAGTGTCCCCGAACCCCGAAGAGTTGCGGTTT
CTGTGAGTCTGTGGTCATTGGATGCAGCAGCGATCATGAAGGCCGATGCCTCCCACGGTC
CCGAGATGGGGGAAGTGCTGCCCCAGCACAAGTTGGACTGCAGGTCCCTGGAAGCCTACC
TATACCAGCACTTGCCTGACTTTGGGGCTGAGCCTGAGGCCAAGCTGACTGTTGCCCAGT
ACAGATCAGGACAGTCCAATCCAACCTTTTATCTCCAGAAGGGCTTTCAAGTATATGTAC
TCAGAAAAAAACCACCTGGTTTACTTCTTCCTAAAGCACATAAGATTGATAGAGAATTTC
AAGTCCAGAAAGCTTTGTTTTCTATTGGATTCCCTGTTCCCAAACCTTTGCTGTACTGCA
GCGATACTTCTGCAGAAAGCTTTGAATTTTATGTGATGGAACATGTACAGGGCCGAATCT
TTCGTGATTTCTACTTCTGTCATTGGAACAGAATTTTATGTGATGGAACATGTACAGGGC
CGAATCTTTCGTGATTTCTCAATTCCTGGAGTTAGCCCAGCGGAACGCTCAGCCATATAT
GTGGCCATGATCGAAACCTTGGCTCAGTTACATTCCTTAAATATACAGTCATTGCAGCTG
GAAGGATATGGTAGAGGTGCCGGGTACTGCAAAAGACAGGTATTAACCTGGACAAAGCAG
TATCAAGCTGCTGCTCATCAGGACATCCCTGCCATGAAGCAGCTATCTGACTGGCTAATG
AAAAACTTGCCAGATAATGACAATGAAGAAAATTTGATTCATGGAGATTTCAAACTAGAT
AACATAGTTTTCCACCCTAAAGAGTCTCGAGTTATAGCTGTGCTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCTGGTGCTTTAAATTCGGAGGTGGACGCGGCCTCGGAGTTCTTATTTGGCCGGAAT
GACTAATGTGGTTTTGCTTTATTTAGAATTGAGGCCTCTAATTCTGAGGCTAGGTGAAAA
TTTTTAATCTGAACACACACCAAGGCCCTCCTGGCGCTTCGCGACTAGAACCCTTAACCT
AGCCAGTCCGCCTAGCCTCGGCTCCGGGAGGGAAGTTGTGATTGGCTGGAACCGCAGGCC
CCCCTCCTCCCGGGCGTCCCGAGCTGTGGAGTGTCCCCGAACCCCGAAGAGTTGCGGTTT
CTGTGAGTCTGTGGTCATTGGATGCAGCAGCGATCATGAAGGCCGATGCCTCCCACGGTC
CCGAGATGGGGGAAGTGCTGCCCCAGCACAAGTTGGACTGCAGGTCCCTGGAAGCCTACC
TATACCAGCACTTGCCTGACTTTGGGGCTGAGCCTGAGGCCAAGCTGACTGTTGCCCAGT
ACAGATCAGGACAGTCCAATCCAACCTTTTATCTCCAGAAGGGCTTTCAAGTATATGTAC
TCAGAAAAAAACCACCTGGTTTACTTCTTCCTAAAGCACATAAGATTGATAGAGAATTTC
AAGTCCAGAAAGCTTTGTTTTCTATTGGATTCCCTGTTCCCAAACCTTTGCTGTACTGCA
GCGATACTTCTGCAGAAAGCTTTGAATTTTATGTGATGGAACATGTACAGGGCCGAATCT
TTCGTGATTTCTACTTCTGTCATTGGAACAGAATTTTATGTGATGGAACATGTACAGGGC
CGAATCTTTCGTGATTTCTCAATTCCTGGAGTTAGCCCAGCGGAACGCTCAGCCATATAT
GTGGCCATGATCGAAACCTTGGCTCAGTTACATTCCTTAAATATACAGTCATTGCAGCTG
GAAGGATATGGTAGAGGTGCCGGGTACTGCAAAAGACAGGTATTAACCTGGACAAAGCAG
TATCAAGCTGCTGCTCATCAGGACATCCCTGCCATGAAGCAGCTATCTGACTGGCTAATG
AAAAACTTGCCAGATAATGACAATGAAGAAAATTTGATTCATGGAGATTTCAAACTAGAT
AACATAGTTTTCCACCCTAAAGAGTCTCGAGTTATAGCTGTGCTGGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29234_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29234_PIG

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-261, gnl|bosTau2|chr9 (59558944-59559204)
               

               
               3-261, gnl|Hg17|chr3 (133861643-133861394)
               

               
               3-261, gnl|Mm7|chr9 (103779554-103779808)
               


               
               277-484, gnl|bosTau2|chr9 (59559249-59559457)
               

               
               277-484, gnl|canFam2|chr23 (32696164-32696466)
               

               
               277-484, gnl|dasNov1|scaffold_10296 (15319-15628)
               

               
               277-484, gnl|echTel1|scaffold_312325 (6658-7050)
               

               
               277-484, gnl|galGal2|chr2 (41426232-41426500)
               

               
               277-484, gnl|hg17|chr3 (133861142-133861458)
               

               
               277-484, gnl|Hg17|chr3 (133861352-133861145)
               

               
               277-484, gnl|loxAfr1|scaffold_49632 (7076-6719)
               

               
               277-484, gnl|mm7|chr9 (103780047-103779736)
               

               
               277-484, gnl|Mm7|chr9 (103779850-103780042)
               

               
               277-484, gnl|monDom2|scaffold_7 (68295211-68294922)
               

               
               277-484, gnl|oryCun1|scaffold_86836 (1070-1381)
               

               
               277-484, gnl|panTro1|chr2 (136000238-136000554)
               

               
               277-484, gnl|rheMac2|chr2 (155033240-155032944)
               

               
               277-484, gnl|rn3|chr8 (109144436-109144130)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-261, gnl|bosTau2|chr9 (59558944-59559204)
               

               
               3-261, gnl|Hg17|chr3 (133861643-133861394)
               

               
               3-261, gnl|Mm7|chr9 (103779554-103779808)
               


               
               277-484, gnl|bosTau2|chr9 (59559249-59559457)
               

               
               277-484, gnl|canFam2|chr23 (32696164-32696466)
               

               
               277-484, gnl|dasNov1|scaffold_10296 (15319-15628)
               

               
               277-484, gnl|echTel1|scaffold_312325 (6658-7050)
               

               
               277-484, gnl|galGal2|chr2 (41426232-41426500)
               

               
               277-484, gnl|hg17|chr3 (133861142-133861458)
               

               
               277-484, gnl|Hg17|chr3 (133861352-133861145)
               

               
               277-484, gnl|loxAfr1|scaffold_49632 (7076-6719)
               

               
               277-484, gnl|mm7|chr9 (103780047-103779736)
               

               
               277-484, gnl|Mm7|chr9 (103779850-103780042)
               

               
               277-484, gnl|monDom2|scaffold_7 (68295211-68294922)
               

               
               277-484, gnl|oryCun1|scaffold_86836 (1070-1381)
               

               
               277-484, gnl|panTro1|chr2 (136000238-136000554)
               

               
               277-484, gnl|rheMac2|chr2 (155033240-155032944)
               

               
               277-484, gnl|rn3|chr8 (109144436-109144130)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	3-261, gnl\|bosTau2\|chr9 (59558944-59559204)
	3-261, gnl\|Hg17\|chr3 (133861643-133861394)
	3-261, gnl\|Mm7\|chr9 (103779554-103779808)

	277-484, gnl\|bosTau2\|chr9 (59559249-59559457)
	277-484, gnl\|canFam2\|chr23 (32696164-32696466)
	277-484, gnl\|dasNov1\|scaffold_10296 (15319-15628)
	277-484, gnl\|echTel1\|scaffold_312325 (6658-7050)
	277-484, gnl\|galGal2\|chr2 (41426232-41426500)
	277-484, gnl\|hg17\|chr3 (133861142-133861458)
	277-484, gnl\|Hg17\|chr3 (133861352-133861145)
	277-484, gnl\|loxAfr1\|scaffold_49632 (7076-6719)
	277-484, gnl\|mm7\|chr9 (103780047-103779736)
	277-484, gnl\|Mm7\|chr9 (103779850-103780042)
	277-484, gnl\|monDom2\|scaffold_7 (68295211-68294922)
	277-484, gnl\|oryCun1\|scaffold_86836 (1070-1381)
	277-484, gnl\|panTro1\|chr2 (136000238-136000554)
	277-484, gnl\|rheMac2\|chr2 (155033240-155032944)
	277-484, gnl\|rn3\|chr8 (109144436-109144130)