Non-Coding RNA Search

Ss1.1-Ova1-OVRM10085F06.5

Sequence:


               
               AAATAAAGTTGTTGATCAAATCCTGTAAACAGCTGGAAGAGGAAAAGGAGATGTTGCAGA
AAGAACTCTCTCGTCTTGAGGGCGTCCAGGAGAAACAGAAGACAGGCACTGTCGTGGACG
CCAGCGTCGATGAATTAATGATCGAGATGAAAGAACTGAAAGAAACTCTTGAAGAAAAAA
ACAAGGAGGCAGACGAATACCTGGATAAATACTGTTCCCTGCTTATAAGCCATGAGAAGT
TAGAGAAAGCCAAAGAGATGTTAGAAACACAAGTTGCTCGTCTGAGCGCACAACAGTCTA
AACTTAATCTTCGAAGCTCTCCTTTGCTGAGTTCAGCTGTTCCAGGACCATCCCCAGACC
CTTCTACTACTGAAAAGAAATTATCATCCAGCCAAAATAAAGCTTCAGGCAAAAGGCAAA
GGTCCAGTGGGATTCGGGAGGATGGAGAAACCACGCCTTCTACGCCAGAGACGTTTTCTA
AAAAAAGCAAGAAAGCTGTCAAAAGTGGTTTTCACCCCACAGAGGATTTAGAAGACGCTG
AGTGTGAGCCAGAGGGACTTCCGGAAGTTGTAAAGAAAGGGTTTGCTGATATCCCAACAG
GAAAGACCAGCCCATATGTCCTGCGGAGAACCACCATGGCCACAAGGACCAGCCCCCGCC
TTGCTGCGCAGAAGTTAGCACCATCTCCCCTAAGTCTCAACAAAGAAAATCTTGCTGAGA
CCTCCAAACCAACAGCTGGTGGCAGCAGATCACAAAAGGTCAAGGTGACTCCGCAGAGCC
CCGTGGATTCAGGCGCTGCCCTCCGAGAACCCACTGCCAGATCTCTCTCCGTCACTAACC
TTCCTGAGAGAAGTTCGGCTGACAGCCCCCATGAGGGCCTGAGGGCCAAGCGAGGCCGGC
TGGTCCCTAGCCCAGAAGCTGGCCCCCAGGCCAAGGAGAGTGAGAACTGTAGGGTCCAGT
AGAAGAGCCCTGTGTGTCAGCAGCCCTGCAGTGCTGAACAGAAGGCAGTGTGTCTGCGAG
GCTCTCTTGCTGGGGAGCACACTGTCAGAGGGAGGAAAACCATTCCTTATAAATCTAAAT
GGACCAGACTCTTTAGATTTCTCCTCAGCATTAGAAAAATTTGGAAGCACTGATTACCTC
TTCACAGACATTCCTCTCCTCTTATGTAGAGTAGTTCTGTATAAACCTTTTTGGTAATGT
TACACGGAAATGGCAAGCACTATATAACACTTCTATTTGTATGTGGATATTACACTTAAA
AAACGCAAAACATTTTTTTTTCCCACTTGAACAGCTCCCAGGAAAATGTAAACCTTTGCG
TTACGATGTTTCCTTTGTATAGTGTTAGGCAGGAAATAACTTTAGATCAAGAATTTCTCT
GCGTTGAGTAAAATGAAGGAAAAGTGTATGTTTTCAAACAAACATGCACACCATCCATAT
GTGGGAGTGTCCCTCCTTCTCTAATGTGTTTTCTAGATCTTGGCTTCTCTAACCTGTACA
TATTTGTGTGTGGGGTGGTGAGAACGGTGTGTTGATTCCCGATGAGCCTGCCTGTAGGTT
CCTCAAAGGTGTAGTATATTGTTTTCTGACATTGTGCTGTTTCTTCTATTAAAATATGAC
ACTTTTTTCTAATAAAAAAATTCACCTTTGTTTTCTGTGAGAATGACTGCTAAAAATGAA
TGTATTATGAACACCGGTACCATTTCTTGCTAACCTCAACAGCCTCTTCTTATAAAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAAAGTTGTTGATCAAATCCTGTAAACAGCTGGAAGAGGAAAAGGAGATGTTGCAGA
AAGAACTCTCTCGTCTTGAGGGCGTCCAGGAGAAACAGAAGACAGGCACTGTCGTGGACG
CCAGCGTCGATGAATTAATGATCGAGATGAAAGAACTGAAAGAAACTCTTGAAGAAAAAA
ACAAGGAGGCAGACGAATACCTGGATAAATACTGTTCCCTGCTTATAAGCCATGAGAAGT
TAGAGAAAGCCAAAGAGATGTTAGAAACACAAGTTGCTCGTCTGAGCGCACAACAGTCTA
AACTTAATCTTCGAAGCTCTCCTTTGCTGAGTTCAGCTGTTCCAGGACCATCCCCAGACC
CTTCTACTACTGAAAAGAAATTATCATCCAGCCAAAATAAAGCTTCAGGCAAAAGGCAAA
GGTCCAGTGGGATTCGGGAGGATGGAGAAACCACGCCTTCTACGCCAGAGACGTTTTCTA
AAAAAAGCAAGAAAGCTGTCAAAAGTGGTTTTCACCCCACAGAGGATTTAGAAGACGCTG
AGTGTGAGCCAGAGGGACTTCCGGAAGTTGTAAAGAAAGGGTTTGCTGATATCCCAACAG
GAAAGACCAGCCCATATGTCCTGCGGAGAACCACCATGGCCACAAGGACCAGCCCCCGCC
TTGCTGCGCAGAAGTTAGCACCATCTCCCCTAAGTCTCAACAAAGAAAATCTTGCTGAGA
CCTCCAAACCAACAGCTGGTGGCAGCAGATCACAAAAGGTCAAGGTGACTCCGCAGAGCC
CCGTGGATTCAGGCGCTGCCCTCCGAGAACCCACTGCCAGATCTCTCTCCGTCACTAACC
TTCCTGAGAGAAGTTCGGCTGACAGCCCCCATGAGGGCCTGAGGGCCAAGCGAGGCCGGC
TGGTCCCTAGCCCAGAAGCTGGCCCCCAGGCCAAGGAGAGTGAGAACTGTAGGGTCCAGT
AGAAGAGCCCTGTGTGTCAGCAGCCCTGCAGTGCTGAACAGAAGGCAGTGTGTCTGCGAG
GCTCTCTTGCTGGGGAGCACACTGTCAGAGGGAGGAAAACCATTCCTTATAAATCTAAAT
GGACCAGACTCTTTAGATTTCTCCTCAGCATTAGAAAAATTTGGAAGCACTGATTACCTC
TTCACAGACATTCCTCTCCTCTTATGTAGAGTAGTTCTGTATAAACCTTTTTGGTAATGT
TACACGGAAATGGCAAGCACTATATAACACTTCTATTTGTATGTGGATATTACACTTAAA
AAACGCAAAACATTTTTTTTTCCCACTTGAACAGCTCCCAGGAAAATGTAAACCTTTGCG
TTACGATGTTTCCTTTGTATAGTGTTAGGCAGGAAATAACTTTAGATCAAGAATTTCTCT
GCGTTGAGTAAAATGAAGGAAAAGTGTATGTTTTCAAACAAACATGCACACCATCCATAT
GTGGGAGTGTCCCTCCTTCTCTAATGTGTTTTCTAGATCTTGGCTTCTCTAACCTGTACA
TATTTGTGTGTGGGGTGGTGAGAACGGTGTGTTGATTCCCGATGAGCCTGCCTGTAGGTT
CCTCAAAGGTGTAGTATATTGTTTTCTGACATTGTGCTGTTTCTTCTATTAAAATATGAC
ACTTTTTTCTAATAAAAAAATTCACCTTTGTTTTCTGTGAGAATGACTGCTAAAAATGAA
TGTATTATGAACACCGGTACCATTTCTTGCTAACCTCAACAGCCTCTTCTTATAAAAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815265|ref|XP_601157.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815265|ref|XP_601157.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               836-955, - strand, RNAz p=0.758025
               

               
               1359-1469, + strand, RNAz p=0.930538

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               836-955, - strand, RNAz p=0.758025
               

               
               1359-1469, + strand, RNAz p=0.930538

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016343, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016343, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               101-580, gnl|bosTau2|chr16 (51279593-51280075)
               

               
               101-580, gnl|Hg17|chr1 (211218666-211219148)
               

               
               101-580, gnl|Mm7|chr1 (189181404-189180922)
               


               
               757-1604, gnl|bosTau2|chr16 (51287036-51287906)
               

               
               757-1604, gnl|Hg17|chr1 (211225327-211226199)
               

               
               757-1604, gnl|Mm7|chr1 (189175116-189174359)
               


               
               1605-1740, gnl|bosTau2|chr16 (51287958-51288092)
               

               
               1605-1740, gnl|Hg17|chr1 (211226254-211226385)
               

               
               1605-1740, gnl|Mm7|chr1 (189174316-189174204)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-580, gnl|bosTau2|chr16 (51279593-51280075)
               

               
               101-580, gnl|Hg17|chr1 (211218666-211219148)
               

               
               101-580, gnl|Mm7|chr1 (189181404-189180922)
               


               
               757-1604, gnl|bosTau2|chr16 (51287036-51287906)
               

               
               757-1604, gnl|Hg17|chr1 (211225327-211226199)
               

               
               757-1604, gnl|Mm7|chr1 (189175116-189174359)
               


               
               1605-1740, gnl|bosTau2|chr16 (51287958-51288092)
               

               
               1605-1740, gnl|Hg17|chr1 (211226254-211226385)
               

               
               1605-1740, gnl|Mm7|chr1 (189174316-189174204)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               thg (0.507164)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	836-955, - strand, RNAz p=0.758025
	1359-1469, + strand, RNAz p=0.930538

	101-580, gnl\|bosTau2\|chr16 (51279593-51280075)
	101-580, gnl\|Hg17\|chr1 (211218666-211219148)
	101-580, gnl\|Mm7\|chr1 (189181404-189180922)

	757-1604, gnl\|bosTau2\|chr16 (51287036-51287906)
	757-1604, gnl\|Hg17\|chr1 (211225327-211226199)
	757-1604, gnl\|Mm7\|chr1 (189175116-189174359)

	1605-1740, gnl\|bosTau2\|chr16 (51287958-51288092)
	1605-1740, gnl\|Hg17\|chr1 (211226254-211226385)
	1605-1740, gnl\|Mm7\|chr1 (189174316-189174204)

	thg (0.507164)
	nbm (0.297974)
	fce (0.271592)
	tes (0.207814)
	fty (0.17584)
	eye (0.170503)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	ova (0.129132)
	cty (0.10408)