Ss1.1-Ova1-OVRM10086E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGACCAGAGGCCAACTCTGACAGGCTCAGGAAGGACAGGAGCAGCCACCCCTGAGAG CAGAGGCAACCAAGCAGCAGTACCTGTCTCCAGGCCTGCCTCCGCTACCAGGAAACAATG CTCCTAGCGACGTTTAAGCTGTGTGCTGGGAGCTCCTACAGACATGTGCGCAACATGAAG GGCCTGAGGCACCAGGCGGTGCTGGCCCTTGGACAGGAGCTGAACCGGAGGGCCCTGGGG GGTCCAACCTCAGGGTCATGGATTAACCAGGTTCGACGTCGGAGCTCTCTTCTTGGTTCT CAGCTGGAAGACACTCTCTACAGTGACCAAGATCTGGCCTATATCCAGCAGGGAGAGGAG GCCATGCAGAGGGCGCTGGACATCCTCAGCAACCAGGAGGGCTGGAAGAAGGAGAGCCGG CAGGAGAATGGGGACGAGGTGCTGAGTAAAGTGATCCCAGATGTGGGCAAGGTGTTCCGG CTGGAGGTGGTGGTGGACCAGCCCATGGAGAGGCTTTATGAAGAGCTTGTGGAGCGCATG GAGGCCATGGGCGAGTGGAACCCCAGTGTCAAGAAGATCAAGATCCTGCAGAAGATTGGA AAAGACACAGTCATCACCCATGAGTTGGCTGCAGAGGCGGCAGGCAACCTCGTGGGGCCC CGAGACTTTGTGAGTGTGCGCTGTACCAAGCGCCGGGGTTCCGTGTGTGTGCTGGCTGGC ATGGCCACAGACTTTGGAGAGATGCCTGAGCAGAAGGGGGTCATCAGAGCTGAGCACGGC CCCACCTGCATGGTGCTCCACCCTCTGGCTGGAAGTCCCTCAAAGACCAAACTCACCTGG CTGCTCAGCATTGACCTCAAGGGATGGCTGCCGAAGACCATTATAAACCAGGTCCTATCA CAGACCCAGGTGGACTTTGCCAATCACCTGCGAAAGCGCCTGGAGTCCCGCCCTGCTCTG GAAGCCAGGTGTTAAAGCTCAGCCCGCCACTGCCGAAGGCTTCTGGCTTGCAGGCTAATG AAGAGATTCCAGCTGGAAGCCTGCAAGACTGTTAAAGAACTTCATCTGGGGACAGTGGGA TGTTGCAGTGGTGTGTGTCGAATATGATACCAGAACTCAGATGGTAACATTTTAGTACCA AGAAAATGGAGGCAAGGCTCTTCTAACTTCATTCACTGATTAACTATAAAATGAAGGTTA AGGGTCCCAAAATATTTGTAAAACTTTCTGCTGAGCCCTTTCGTGTCTACCTAAACATCT TTATAATGCTGTCGGCTGACACAGGATCAGAGGATCGGGACGTCATGCCTGATGAGCTTA AGAGCTCCATTCCCTTCGGGTGGCGTGTGCAGACACGGCAGGTCCTATGCAAGGGTCGCC CGCCACCCTCTGCTCCTCCACCAGATGGGTAGAGAGCTGTGTCACAGAACAAGCAGCTGC TTTCCAGAAATCTAATCCACGTTAACTTGAGGAAGAAACACAAAACTATTAGAGTGGTTC CATTCTTCCAGAGCAGCAGTCAGAATAAAAAATCATAACACAAACACTTCAGTCTGTACC AGTTTTAAAATTCTACTAAAATCCACTCTAGTAAATCGCAACTTCATATAAATCCCCACC TTGTTCAAAGGAAAAACTGCTGGGGACTGTGGTCATTTAATTACATAGAATCTGTTATCA GAATCTTCCGTAAAATCTAATTTGCACAAGCCCAAATCTGTTCTTAAAAGAACTCTATGG CTGGTAGCTGATTAATGGGCACTGGAAGATGAAGATTATGACTAAAGATTTTTACTTACC TAATTAAAAGGACAGAATCAAAAGGGAGTGACTGAATGGTATTAACTAAGATAAAGTTAA ACAAAAGTAAATTTTATTACTTTCCCATTAGTGATTGTTTAGATGCAAAAGGAACTGAAT TTTTAGTTCAGTCAATTATATCACCTCAGGACCACTCAGGCCTGCCGATTTCTCTGCTTC AACAGATCAATGTTTTACTATTTTGGAAGAGACGGATGGAAGGGATAGTTGGGGGTAACA GCAAAATCCCTGTCCAAGATTTTCAGATTCAGAGAACTTAAGCTTTAAAAATATAAGTTG AGATGTGGCTAAAATGTATACATAGGATGAAAACCTGACCATTATCATTGGAGGCTTTTC CACTCTAGGGCGATTTACACCATTTGGAATTAAAGCTCTAGCTTATTTATTAAAAATTAG CAATAGCAGGAATGTGGGTATTTATTGAGGTTACCGATTTATTATTATTTATTCAGATTA CTTCTTAGTAGTCTATTTTTTGCATAGATGAAATCATGTTCATCCAGCCAGGAGCTTCAG AGTGAGACGGGGTAATTGTAGAAATATTTCTAGAACAGAATTACCATCTACTCCCAGCTA AGAGAAAATGGGTACTTGTTGAAAGATGTGTGCAGCAACATCCACTCTGGTTTCAAGAGA ACAGGCTGACAAGAAAGATACGGGTTTTCAACACACACCATGGTTTTGAGTTTGATTATA ATTTGTCTTTTTCAAACTCTGCAACTTGTGCCTTTGAGGTGCCTGGGGAGATCTTTTCTC ACTTGTTTGATTTTACACTGGAATAAAATGAGTTGTCAGTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGACCAGAGGCCAACTCTGACAGGCTCAGGAAGGACAGGAGCAGCCACCCCTGAGAG CAGAGGCAACCAAGCAGCAGTACCTGTCTCCAGGCCTGCCTCCGCTACCAGGAAACAATG CTCCTAGCGACGTTTAAGCTGTGTGCTGGGAGCTCCTACAGACATGTGCGCAACATGAAG GGCCTGAGGCACCAGGCGGTGCTGGCCCTTGGACAGGAGCTGAACCGGAGGGCCCTGGGG GGTCCAACCTCAGGGTCATGGATTAACCAGGTTCGACGTCGGAGCTCTCTTCTTGGTTCT CAGCTGGAAGACACTCTCTACAGTGACCAAGATCTGGCCTATATCCAGCAGGGAGAGGAG GCCATGCAGAGGGCGCTGGACATCCTCAGCAACCAGGAGGGCTGGAAGAAGGAGAGCCGG CAGGAGAATGGGGACGAGGTGCTGAGTAAAGTGATCCCAGATGTGGGCAAGGTGTTCCGG CTGGAGGTGGTGGTGGACCAGCCCATGGAGAGGCTTTATGAAGAGCTTGTGGAGCGCATG GAGGCCATGGGCGAGTGGAACCCCAGTGTCAAGAAGATCAAGATCCTGCAGAAGATTGGA AAAGACACAGTCATCACCCATGAGTTGGCTGCAGAGGCGGCAGGCAACCTCGTGGGGCCC CGAGACTTTGTGAGTGTGCGCTGTACCAAGCGCCGGGGTTCCGTGTGTGTGCTGGCTGGC ATGGCCACAGACTTTGGAGAGATGCCTGAGCAGAAGGGGGTCATCAGAGCTGAGCACGGC CCCACCTGCATGGTGCTCCACCCTCTGGCTGGAAGTCCCTCAAAGACCAAACTCACCTGG CTGCTCAGCATTGACCTCAAGGGATGGCTGCCGAAGACCATTATAAACCAGGTCCTATCA CAGACCCAGGTGGACTTTGCCAATCACCTGCGAAAGCGCCTGGAGTCCCGCCCTGCTCTG GAAGCCAGGTGTTAAAGCTCAGCCCGCCACTGCCGAAGGCTTCTGGCTTGCAGGCTAATG AAGAGATTCCAGCTGGAAGCCTGCAAGACTGTTAAAGAACTTCATCTGGGGACAGTGGGA TGTTGCAGTGGTGTGTGTCGAATATGATACCAGAACTCAGATGGTAACATTTTAGTACCA AGAAAATGGAGGCAAGGCTCTTCTAACTTCATTCACTGATTAACTATAAAATGAAGGTTA AGGGTCCCAAAATATTTGTAAAACTTTCTGCTGAGCCCTTTCGTGTCTACCTAAACATCT TTATAATGCTGTCGGCTGACACAGGATCAGAGGATCGGGACGTCATGCCTGATGAGCTTA AGAGCTCCATTCCCTTCGGGTGGCGTGTGCAGACACGGCAGGTCCTATGCAAGGGTCGCC CGCCACCCTCTGCTCCTCCACCAGATGGGTAGAGAGCTGTGTCACAGAACAAGCAGCTGC TTTCCAGAAATCTAATCCACGTTAACTTGAGGAAGAAACACAAAACTATTAGAGTGGTTC CATTCTTCCAGAGCAGCAGTCAGAATAAAAAATCATAACACAAACACTTCAGTCTGTACC AGTTTTAAAATTCTACTAAAATCCACTCTAGTAAATCGCAACTTCATATAAATCCCCACC TTGTTCAAAGGAAAAACTGCTGGGGACTGTGGTCATTTAATTACATAGAATCTGTTATCA GAATCTTCCGTAAAATCTAATTTGCACAAGCCCAAATCTGTTCTTAAAAGAACTCTATGG CTGGTAGCTGATTAATGGGCACTGGAAGATGAAGATTATGACTAAAGATTTTTACTTACC TAATTAAAAGGACAGAATCAAAAGGGAGTGACTGAATGGTATTAACTAAGATAAAGTTAA ACAAAAGTAAATTTTATTACTTTCCCATTAGTGATTGTTTAGATGCAAAAGGAACTGAAT TTTTAGTTCAGTCAATTATATCACCTCAGGACCACTCAGGCCTGCCGATTTCTCTGCTTC AACAGATCAATGTTTTACTATTTTGGAAGAGACGGATGGAAGGGATAGTTGGGGGTAACA GCAAAATCCCTGTCCAAGATTTTCAGATTCAGAGAACTTAAGCTTTAAAAATATAAGTTG AGATGTGGCTAAAATGTATACATAGGATGAAAACCTGACCATTATCATTGGAGGCTTTTC CACTCTAGGGCGATTTACACCATTTGGAATTAAAGCTCTAGCTTATTTATTAAAAATTAG CAATAGCAGGAATGTGGGTATTTATTGAGGTTACCGATTTATTATTATTTATTCAGATTA CTTCTTAGTAGTCTATTTTTTGCATAGATGAAATCATGTTCATCCAGCCAGGAGCTTCAG AGTGAGACGGGGTAATTGTAGAAATATTTCTAGAACAGAATTACCATCTACTCCCAGCTA AGAGAAAATGGGTACTTGTTGAAAGATGTGTGCAGCAACATCCACTCTGGTTTCAAGAGA ACAGGCTGACAAGAAAGATACGGGTTTTCAACACACACCATGGTTTTGAGTTTGATTATA ATTTGTCTTTTTCAAACTCTGCAACTTGTGCCTTTGAGGTGCCTGGGGAGATCTTTTCTC ACTTGTTTGATTTTACACTGGAATAAAATGAGTTGTCAGTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 38-145, - strand, RNAz p=0.995144 | |
| 315-2419, + strand, RNAz p=0.760912 | |
| 1664-1773, - strand, RNAz p=0.653972 | |
| 2131-2235, - strand, RNAz p=0.751401 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 38-145, - strand, RNAz p=0.995144 | |
| 315-2419, + strand, RNAz p=0.760912 | |
| 1664-1773, - strand, RNAz p=0.653972 | |
| 2131-2235, - strand, RNAz p=0.751401 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-231, gnl|bosTau2|chr11 (4040546-4040789) | |
| 295-433, gnl|bosTau2|chr27 (21198420-21198283) | |
| 295-433, gnl|canFam2|chr16 (30281659-30281500) | |
| 295-433, gnl|danRer3|chr17 (25539371-25539252) | |
| 295-433, gnl|dasNov1|scaffold_17278 (9740-9582) | |
| 295-433, gnl|echTel1|scaffold_321713 (4432-4276) | |
| 295-433, gnl|fr1|chrUn (282983317-282983448) | |
| 295-433, gnl|galGal2|chrUn (454600-454724) | |
| 295-433, gnl|hg17|chr8 (38124861-38125017) | |
| 295-433, gnl|Hg17|chr8 (38125003-38124868) | |
| 295-433, gnl|mm7|chr8 (24566445-24566283) | |
| 295-433, gnl|Mm7|chr8 (24566295-24566434) | |
| 295-433, gnl|monDom2|scaffold_1 (84770518-84770374) | |
| 295-433, gnl|oryCun1|scaffold_121880 (30076-30234) | |
| 295-433, gnl|panTro1|chr7 (39498133-39498289) | |
| 295-433, gnl|rheMac2|chr8 (38602799-38602955) | |
| 295-433, gnl|rn3|chr16 (70645988-70646150) | |
| 295-433, gnl|tetNig1|chrUn_random (99476641-99476771) | |
| 295-433, gnl|xenTro1|scaffold_190 (794731-794595) | |
| 581-767, gnl|bosTau2|chr27 (21196127-21195941) | |
| 581-767, gnl|canFam2|chr16 (30283221-30283019) | |
| 581-767, gnl|danRer3|chr17 (25540020-25539795) | |
| 581-767, gnl|dasNov1|scaffold_17278 (11332-11129) | |
| 581-767, gnl|echTel1|scaffold_321713 (5874-5671) | |
| 581-767, gnl|fr1|chrUn (282982407-282982628) | |
| 581-767, gnl|galGal2|chrUn (453906-454109) | |
| 581-767, gnl|hg17|chr8 (38122623-38122826) | |
| 581-767, gnl|Hg17|chr8 (38122824-38122638) | |
| 581-767, gnl|loxAfr1|scaffold_46036 (25214-25011) | |
| 581-767, gnl|mm7|chr8 (24567904-24567700) | |
| 581-767, gnl|Mm7|chr8 (24567700-24567886) | |
| 581-767, gnl|monDom2|scaffold_1 (84774427-84774226) | |
| 581-767, gnl|oryCun1|scaffold_121880 (28498-28701) | |
| 581-767, gnl|panTro1|chr7 (39495889-39496092) | |
| 581-767, gnl|rheMac2|chr8 (38600926-38601129) | |
| 581-767, gnl|rn3|chr16 (70644451-70644654) | |
| 581-767, gnl|tetNig1|chrUn_random (99476082-99476282) | |
| 581-767, gnl|xenTro1|scaffold_190 (795570-795367) | |
| 851-1438, gnl|bosTau2|chr27 (21194407-21193794) | |
| 851-1438, gnl|Hg17|chr8 (38121071-38120455) | |
| 1624-2505, gnl|bosTau2|chr27 (21632983-21632078) | |
| 2522-2638, gnl|bosTau2|chr27 (21632080-21631970) | |
| 2522-2638, gnl|Hg17|chr8 (38118522-38118424) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-231, gnl|bosTau2|chr11 (4040546-4040789) | |
| 295-433, gnl|bosTau2|chr27 (21198420-21198283) | |
| 295-433, gnl|canFam2|chr16 (30281659-30281500) | |
| 295-433, gnl|danRer3|chr17 (25539371-25539252) | |
| 295-433, gnl|dasNov1|scaffold_17278 (9740-9582) | |
| 295-433, gnl|echTel1|scaffold_321713 (4432-4276) | |
| 295-433, gnl|fr1|chrUn (282983317-282983448) | |
| 295-433, gnl|galGal2|chrUn (454600-454724) | |
| 295-433, gnl|hg17|chr8 (38124861-38125017) | |
| 295-433, gnl|Hg17|chr8 (38125003-38124868) | |
| 295-433, gnl|mm7|chr8 (24566445-24566283) | |
| 295-433, gnl|Mm7|chr8 (24566295-24566434) | |
| 295-433, gnl|monDom2|scaffold_1 (84770518-84770374) | |
| 295-433, gnl|oryCun1|scaffold_121880 (30076-30234) | |
| 295-433, gnl|panTro1|chr7 (39498133-39498289) | |
| 295-433, gnl|rheMac2|chr8 (38602799-38602955) | |
| 295-433, gnl|rn3|chr16 (70645988-70646150) | |
| 295-433, gnl|tetNig1|chrUn_random (99476641-99476771) | |
| 295-433, gnl|xenTro1|scaffold_190 (794731-794595) | |
| 581-767, gnl|bosTau2|chr27 (21196127-21195941) | |
| 581-767, gnl|canFam2|chr16 (30283221-30283019) | |
| 581-767, gnl|danRer3|chr17 (25540020-25539795) | |
| 581-767, gnl|dasNov1|scaffold_17278 (11332-11129) | |
| 581-767, gnl|echTel1|scaffold_321713 (5874-5671) | |
| 581-767, gnl|fr1|chrUn (282982407-282982628) | |
| 581-767, gnl|galGal2|chrUn (453906-454109) | |
| 581-767, gnl|hg17|chr8 (38122623-38122826) | |
| 581-767, gnl|Hg17|chr8 (38122824-38122638) | |
| 581-767, gnl|loxAfr1|scaffold_46036 (25214-25011) | |
| 581-767, gnl|mm7|chr8 (24567904-24567700) | |
| 581-767, gnl|Mm7|chr8 (24567700-24567886) | |
| 581-767, gnl|monDom2|scaffold_1 (84774427-84774226) | |
| 581-767, gnl|oryCun1|scaffold_121880 (28498-28701) | |
| 581-767, gnl|panTro1|chr7 (39495889-39496092) | |
| 581-767, gnl|rheMac2|chr8 (38600926-38601129) | |
| 581-767, gnl|rn3|chr16 (70644451-70644654) | |
| 581-767, gnl|tetNig1|chrUn_random (99476082-99476282) | |
| 581-767, gnl|xenTro1|scaffold_190 (795570-795367) | |
| 851-1438, gnl|bosTau2|chr27 (21194407-21193794) | |
| 851-1438, gnl|Hg17|chr8 (38121071-38120455) | |
| 1624-2505, gnl|bosTau2|chr27 (21632983-21632078) | |
| 2522-2638, gnl|bosTau2|chr27 (21632080-21631970) | |
| 2522-2638, gnl|Hg17|chr8 (38118522-38118424) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| sug (12.0927) | |
| cov (4.49319) | |
| tes (1.4547) | |
| cag (0.604778) | |
| amn (0.417711) | |
| cte (0.29274) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| med (0.116252) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (12.0927) | |
| cov (4.49319) | |
| tes (1.4547) | |
| cag (0.604778) | |
| amn (0.417711) | |
| cte (0.29274) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| med (0.116252) |