Non-Coding RNA Search

Ss1.1-Ova1-OVRM10087D11.5

Sequence:


               
               ATAGAACACCCCAGCCAACTGCTAACATATATTGGAATCCCAACTGCCCTTTTGTGAAAG
GAAAAAAAAAGAATTATGTCCAAGAGCAAACTCGACATTTTACAGGCAAATTCCAAACTC
TTCTATGCATATATTTGTAGCTCTCACTTCATTTTCTGTGCCAGTGGAGGGGCGGCCAAA
ACACTCACAAATACCCGTCATTGCTTTTTCTCACCTCCAGTGCCCCCGTCCCTCTGGCAG
CCTTTATGAGTTGATTTCATAAGCAGCGGATGGATGGTTGTCGGTTTCATCTTTTCCTAC
CTCCTGGTGGGGGTGTTGGTGAACTTGACAGAGGAGGGGAGAACCCTTGGCCGTCTGGGG
GGCGGGGGGTGCTGTGAGAACCCCCCCTCTCGCCCCGGGGTTCTGTAAGTTACGAAAGCT
TTCTGGCAGGTGAGAAAATAAGATAGGAGATCGATGACTTTCCATGCTTTTATATTTGGC
AGTTTACAAGTCTAGACTTTTCCTACTGTGGCAGTCTTTTTTAATGTAATTCTTTGGAGG
TAACACAATATTTTGGAGTCTTAAGAATTTGATTTTATACCAATAAGAAATAAAAATTAG
GGATCTTTCCTGTAGTGTATAGTTTTACTATTTTAAAGAGATCTCTGAATTTTACAAGAG
AACCAACATTCCTTAGTGGCAAAACTTTGAAAGTTGATTCTGGGGAGGCTTTTTGCTGCA
GGATCTCAAACAAAAATGGGATGATTCTAGTTAAATGTTTTTAATTTTTAAACTTCCATC
AGGTCGATACTTAAGCTATATTTGGTAAAGAGTAAATCATCCTTTAGTATGCTGCATATA
AAGATCAGCGTTGTTGCACTTTCTCAATAATAATAGATGCCCTACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGAACACCCCAGCCAACTGCTAACATATATTGGAATCCCAACTGCCCTTTTGTGAAAG
GAAAAAAAAAGAATTATGTCCAAGAGCAAACTCGACATTTTACAGGCAAATTCCAAACTC
TTCTATGCATATATTTGTAGCTCTCACTTCATTTTCTGTGCCAGTGGAGGGGCGGCCAAA
ACACTCACAAATACCCGTCATTGCTTTTTCTCACCTCCAGTGCCCCCGTCCCTCTGGCAG
CCTTTATGAGTTGATTTCATAAGCAGCGGATGGATGGTTGTCGGTTTCATCTTTTCCTAC
CTCCTGGTGGGGGTGTTGGTGAACTTGACAGAGGAGGGGAGAACCCTTGGCCGTCTGGGG
GGCGGGGGGTGCTGTGAGAACCCCCCCTCTCGCCCCGGGGTTCTGTAAGTTACGAAAGCT
TTCTGGCAGGTGAGAAAATAAGATAGGAGATCGATGACTTTCCATGCTTTTATATTTGGC
AGTTTACAAGTCTAGACTTTTCCTACTGTGGCAGTCTTTTTTAATGTAATTCTTTGGAGG
TAACACAATATTTTGGAGTCTTAAGAATTTGATTTTATACCAATAAGAAATAAAAATTAG
GGATCTTTCCTGTAGTGTATAGTTTTACTATTTTAAAGAGATCTCTGAATTTTACAAGAG
AACCAACATTCCTTAGTGGCAAAACTTTGAAAGTTGATTCTGGGGAGGCTTTTTGCTGCA
GGATCTCAAACAAAAATGGGATGATTCTAGTTAAATGTTTTTAATTTTTAAACTTCCATC
AGGTCGATACTTAAGCTATATTTGGTAAAGAGTAAATCATCCTTTAGTATGCTGCATATA
AAGATCAGCGTTGTTGCACTTTCTCAATAATAATAGATGCCCTACAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               157-261, - strand, RNAz p=0.944631
               

               
               568-685, + strand, RNAz p=0.703425

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-261, - strand, RNAz p=0.944631
               

               
               568-685, + strand, RNAz p=0.703425

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-888, gnl|bosTau2|chr14 (2880080-2879209)
               

               
               3-888, gnl|Hg17|chr8 (141601355-141600466)
               

               
               3-888, gnl|Mm7|chr15 (73177497-73176555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-888, gnl|bosTau2|chr14 (2880080-2879209)
               

               
               3-888, gnl|Hg17|chr8 (141601355-141600466)
               

               
               3-888, gnl|Mm7|chr15 (73177497-73176555)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               liv (0.146284)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               liv (0.146284)
               

               
               ecc (0.115035)

	157-261, - strand, RNAz p=0.944631
	568-685, + strand, RNAz p=0.703425

	3-888, gnl\|bosTau2\|chr14 (2880080-2879209)
	3-888, gnl\|Hg17\|chr8 (141601355-141600466)
	3-888, gnl\|Mm7\|chr15 (73177497-73176555)