Non-Coding RNA Search

Ss1.1-Ova1-OVRM10088B06.5

Sequence:


               
               AAAAAAGAAAAGAAGAAGAAACGCAGAGCTAAAAAGTATAAGAAAAAGAAGTCTAAGAAG
AGCAGAAAAGATTCCAGCGATTCAAGTTCTAAAGAGTCCCAGGAAGAGTTGCTGGAGAAT
CCCTGGAAGGATCGATCAAAGCCTGAAGAACCCTCTGATTTGATTGGCCCAGAGGCTCCC
AAAACACTTGCCTCTCAAGATGATAAGCCTTTGAACTATGGCCATGCTCTGTTACCTGGT
GAAGGTGCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAA
ATTGGCCTGACAAGTGAAGAAATTGCATCATTTGAATGCTCGGGTTATGTAATGAGTGGT
AGCAGGCATCGCCGGATGGAGGCTGTGCGACTGCGAAAAGAGAACCAGATCTATAGTGCT
GATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGGAAGAGAGAAAACAAG
ATTCTGGCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGAGGACAAGTAA
GGATTTTCTGATTGTTCATCAGACATTTTTAACAACAAAAAAGTCTGGGTTCCATATGTA
CACAAAAAGATTACCATGATCTGAAAAAGCTTTACAGTGCTACTGTGCCTTCTATTTAAT
TCTTTCAGTCCTTCAATAAAAAGCTGCTTATTGATAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAGAAAAGAAGAAGAAACGCAGAGCTAAAAAGTATAAGAAAAAGAAGTCTAAGAAG
AGCAGAAAAGATTCCAGCGATTCAAGTTCTAAAGAGTCCCAGGAAGAGTTGCTGGAGAAT
CCCTGGAAGGATCGATCAAAGCCTGAAGAACCCTCTGATTTGATTGGCCCAGAGGCTCCC
AAAACACTTGCCTCTCAAGATGATAAGCCTTTGAACTATGGCCATGCTCTGTTACCTGGT
GAAGGTGCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAA
ATTGGCCTGACAAGTGAAGAAATTGCATCATTTGAATGCTCGGGTTATGTAATGAGTGGT
AGCAGGCATCGCCGGATGGAGGCTGTGCGACTGCGAAAAGAGAACCAGATCTATAGTGCT
GATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGGAAGAGAGAAAACAAG
ATTCTGGCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGAGGACAAGTAA
GGATTTTCTGATTGTTCATCAGACATTTTTAACAACAAAAAAGTCTGGGTTCCATATGTA
CACAAAAAGATTACCATGATCTGAAAAAGCTTTACAGTGCTACTGTGCCTTCTATTTAAT
TCTTTCAGTCCTTCAATAAAAAGCTGCTTATTGATAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841685|ref|XP_606306.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841685|ref|XP_606306.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-547, gnl|bosTau2|chr23 (25715231-25714682)
               

               
               1-547, gnl|Hg17|chr6 (28335798-28336346)
               

               
               1-547, gnl|Mm7|chr13 (20833782-20833234)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-547, gnl|bosTau2|chr23 (25715231-25714682)
               

               
               1-547, gnl|Hg17|chr6 (28335798-28336346)
               

               
               1-547, gnl|Mm7|chr13 (20833782-20833234)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cte (1.17096)
               

               
               sin (0.524843)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               sin (0.524843)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

	1-547, gnl\|bosTau2\|chr23 (25715231-25714682)
	1-547, gnl\|Hg17\|chr6 (28335798-28336346)
	1-547, gnl\|Mm7\|chr13 (20833782-20833234)

	cte (1.17096)
	sin (0.524843)
	gul (0.355177)
	rec (0.346141)
	sme (0.305437)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	pty (0.142714)
	ova (0.129132)
	sug (0.127291)
	ebs (0.118301)