Non-Coding RNA Search

Ss1.1-Ova1-OVRM10088C11.5

Sequence:


               
               GCGGAACTTTCCAGAACGCTCGGTGAGAGGCGGAGGAGCGGCGGCTGCCCGAGCTGCGCA
CAGAAACGCGCTCCTTCCCGCTCCCCCACATCGGCCTAGGCCCGCTCACCGGCTGTAGAA
AATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAAGA
AGAATTGAAAAAGGCTTACAGGAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAA
TGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAGTGCTCTCTGATGCAAAGAA
AAGGGAATTATATGATAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGG
TTTTGGCTCCCCCATGGATATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAG
AGAAAGGAGAGGTAAAAATGTTGTGCATCAACTCTCAGTAACTTTAGAAGATTTATATAA
TGGTGCAACAAGAAAACTAGCTCTGCAGAAGAATGTGATTTGTGACAAATGTGAAGGCCG
AGGTGGTAAGAAAGGAGCAGTAGAATGCTGTCCCAATTGCCGAGGTACTGGAATGCAAAT
AAGAATTCATCAAATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTG
CCAGGGCCATGGGGAGCGGATCAGTCCTAAAGATAGATGTAAAAGTTGCAATGGGAGGAA
GATAGTTCGAGAAAAGAAAATTCTAGAAGTTCATATTGACAAAGGCATGAAAGATGGCCA
GAAGATAACATTCCATGGTGAGGGAGACCAAGAACCAGGACTGGAGCCAGGAGACATTAT
CATTGTTTTAGATCAGAAGGACCATGCCGTTTTTACTCGACGAGGAGAAGACCTTTTTAT
GTGTATGGACATACAGCTGGTTGAGGCATTGTGTGGCTTCCAAAAGCCGATATCTACTCT
TGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAGATTGTCAAGCATGGAGATAT
CAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCT
AATTATTGAATTTAAGGTGAACTTTCCTGAGAATGGTTTTCTCTCCCCTGATAAACTCTC
TTTGCTGGAAAAACTCCTACCTGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCA
GGTAGAACTAGTGGACTTTGATCCAAATCAGGAGAGACGACGCCATTACAATGGAGAAGC
ATATGAGGATGATGAACATCATCCTCGGGGTGGTGTTCAGTGTCAGACCTCTTAATGGGG
CCAGTGAATAACGCTTACTGCTGGCATTTTATTTGCTGCAGTAGTGATTGAGTGAAGGAC
TATAATCATAATATGCTCACTACTTGGTATTGTTTTAATATTCAACTATAGTAGTGTTTT
AAAAGTTAAATGAAGAATAAACTCAAATATAAAAGCTCTGACTTTGCCCTGTATGTATGG
TGACTTCAGTGTGCAAGAAAAGTTTAATACCTGTAAAAAACTACTTTAAAAAAAACAATT
CCCCTACCATTTGTTAGGCCATACCTTGTAATTGATTTCAGCTATGTACATGGAATAGCT
TAGACTGAAATGCCAGGTGTGTATGTATTGACTTCAGTGTATGACCCTTAATTGTTAAGC
TATGAAGTTAAAACTGTATTTAACTGGCAATCAGGCAAAGAACTTAATTTGTAGAAGTGT
TGGTCTGTATAGTTGTATTCAGTTGGGATTCATTGTGATGCTTCTGCATTTATTATTCTA
TTGCCTCAACTGTTACTTGAAGATGGCATGCTATATATATAATTTAATTTAGCCTCTGGT
GATAGTGATAGAAATGATACCTTTCTAAAGAAGGGGTTTATCATTAACATGCTGCTTGAG
GGCTTTGCACTTGTAAAATTGCATTCCCTTTTGCTGTGCCATCTTTTTTTAAATATAACT
ATTGGTCCTGATTAAACATTTTTTTTCCCTCTTTGGAGCACGGTAAGCATTAGAGTAGTG
ACTTCTCTGGAGCAGGATAATTTAGAAGTTAGTGGTGAGACCTTAACATGGAGAAGTAAT
TTGCATGTATCAGGATAGGAAGGTGTTTTGCAGGCATGTTATAGGCTTACTTTAAACCAT
TTAACTTACGCTCCAAAGTAACTGTAATTTAATGTTGGTAGTATAGCAAATTATGATGAA
TAGCTTTAATTAACTGTATGTTTAAAGTCATGTTCACAAGCTTAAATCTGGATATCAGAA
TTTAAGCAATTCTTGAAATGTATGACTGTTTCCTTAATACACTGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAACTTTCCAGAACGCTCGGTGAGAGGCGGAGGAGCGGCGGCTGCCCGAGCTGCGCA
CAGAAACGCGCTCCTTCCCGCTCCCCCACATCGGCCTAGGCCCGCTCACCGGCTGTAGAA
AATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAAGA
AGAATTGAAAAAGGCTTACAGGAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAA
TGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAGTGCTCTCTGATGCAAAGAA
AAGGGAATTATATGATAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGG
TTTTGGCTCCCCCATGGATATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAG
AGAAAGGAGAGGTAAAAATGTTGTGCATCAACTCTCAGTAACTTTAGAAGATTTATATAA
TGGTGCAACAAGAAAACTAGCTCTGCAGAAGAATGTGATTTGTGACAAATGTGAAGGCCG
AGGTGGTAAGAAAGGAGCAGTAGAATGCTGTCCCAATTGCCGAGGTACTGGAATGCAAAT
AAGAATTCATCAAATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTG
CCAGGGCCATGGGGAGCGGATCAGTCCTAAAGATAGATGTAAAAGTTGCAATGGGAGGAA
GATAGTTCGAGAAAAGAAAATTCTAGAAGTTCATATTGACAAAGGCATGAAAGATGGCCA
GAAGATAACATTCCATGGTGAGGGAGACCAAGAACCAGGACTGGAGCCAGGAGACATTAT
CATTGTTTTAGATCAGAAGGACCATGCCGTTTTTACTCGACGAGGAGAAGACCTTTTTAT
GTGTATGGACATACAGCTGGTTGAGGCATTGTGTGGCTTCCAAAAGCCGATATCTACTCT
TGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAGATTGTCAAGCATGGAGATAT
CAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCT
AATTATTGAATTTAAGGTGAACTTTCCTGAGAATGGTTTTCTCTCCCCTGATAAACTCTC
TTTGCTGGAAAAACTCCTACCTGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCA
GGTAGAACTAGTGGACTTTGATCCAAATCAGGAGAGACGACGCCATTACAATGGAGAAGC
ATATGAGGATGATGAACATCATCCTCGGGGTGGTGTTCAGTGTCAGACCTCTTAATGGGG
CCAGTGAATAACGCTTACTGCTGGCATTTTATTTGCTGCAGTAGTGATTGAGTGAAGGAC
TATAATCATAATATGCTCACTACTTGGTATTGTTTTAATATTCAACTATAGTAGTGTTTT
AAAAGTTAAATGAAGAATAAACTCAAATATAAAAGCTCTGACTTTGCCCTGTATGTATGG
TGACTTCAGTGTGCAAGAAAAGTTTAATACCTGTAAAAAACTACTTTAAAAAAAACAATT
CCCCTACCATTTGTTAGGCCATACCTTGTAATTGATTTCAGCTATGTACATGGAATAGCT
TAGACTGAAATGCCAGGTGTGTATGTATTGACTTCAGTGTATGACCCTTAATTGTTAAGC
TATGAAGTTAAAACTGTATTTAACTGGCAATCAGGCAAAGAACTTAATTTGTAGAAGTGT
TGGTCTGTATAGTTGTATTCAGTTGGGATTCATTGTGATGCTTCTGCATTTATTATTCTA
TTGCCTCAACTGTTACTTGAAGATGGCATGCTATATATATAATTTAATTTAGCCTCTGGT
GATAGTGATAGAAATGATACCTTTCTAAAGAAGGGGTTTATCATTAACATGCTGCTTGAG
GGCTTTGCACTTGTAAAATTGCATTCCCTTTTGCTGTGCCATCTTTTTTTAAATATAACT
ATTGGTCCTGATTAAACATTTTTTTTCCCTCTTTGGAGCACGGTAAGCATTAGAGTAGTG
ACTTCTCTGGAGCAGGATAATTTAGAAGTTAGTGGTGAGACCTTAACATGGAGAAGTAAT
TTGCATGTATCAGGATAGGAAGGTGTTTTGCAGGCATGTTATAGGCTTACTTTAAACCAT
TTAACTTACGCTCCAAAGTAACTGTAATTTAATGTTGGTAGTATAGCAAATTATGATGAA
TAGCTTTAATTAACTGTATGTTTAAAGTCATGTTCACAAGCTTAAATCTGGATATCAGAA
TTTAAGCAATTCTTGAAATGTATGACTGTTTCCTTAATACACTGATTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T7Q0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T7Q0_HUMAN

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               25-1365, - strand, RNAz p=0.900003
               

               
               925-1020, - strand, RNAz p=0.505759
               

               
               1121-1360, - strand, RNAz p=0.995168
               

               
               2199-2328, - strand, RNAz p=0.919052

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-1365, - strand, RNAz p=0.900003
               

               
               925-1020, - strand, RNAz p=0.505759
               

               
               1121-1360, - strand, RNAz p=0.995168
               

               
               2199-2328, - strand, RNAz p=0.919052

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-2328, gnl|bosTau2|chr15 (8817098-8819407)
               

               
               2-2328, gnl|Hg17|chrX (106402350-106399942)
               

               
               2-2328, gnl|Mm7|chr4 (40860995-40872354)
               


               
               1210-1454, gnl|bosTau2|chr10 (54691977-54691731)
               

               
               1210-1454, gnl|Hg17|chrX (106401129-106400884)
               

               
               1210-1454, gnl|Mm7|chr4 (40871301-40871545)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-2328, gnl|bosTau2|chr15 (8817098-8819407)
               

               
               2-2328, gnl|Hg17|chrX (106402350-106399942)
               

               
               2-2328, gnl|Mm7|chr4 (40860995-40872354)
               


               
               1210-1454, gnl|bosTau2|chr10 (54691977-54691731)
               

               
               1210-1454, gnl|Hg17|chrX (106401129-106400884)
               

               
               1210-1454, gnl|Mm7|chr4 (40871301-40871545)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

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               tes (1.24688)
               

               
               sug (1.01833)
               

               
               fcc (0.988924)
               

               
               fco (0.943248)
               

               
               liv (0.877706)
               

               
               elu (0.770713)
               

               
               kid (0.648677)
               

               
               ecc (0.575175)
               

               
               spl (0.572738)
               

               
               cty (0.5204)
               

               
               fhi (0.508733)
               

               
               bla (0.497389)
               

               
               pgl (0.473934)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.24688)
               

               
               sug (1.01833)
               

               
               fcc (0.988924)
               

               
               fco (0.943248)
               

               
               liv (0.877706)
               

               
               elu (0.770713)
               

               
               kid (0.648677)
               

               
               ecc (0.575175)
               

               
               spl (0.572738)
               

               
               cty (0.5204)
               

               
               fhi (0.508733)
               

               
               bla (0.497389)
               

               
               pgl (0.473934)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               thg (0.380373)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	25-1365, - strand, RNAz p=0.900003
	925-1020, - strand, RNAz p=0.505759
	1121-1360, - strand, RNAz p=0.995168
	2199-2328, - strand, RNAz p=0.919052

	2-2328, gnl\|bosTau2\|chr15 (8817098-8819407)
	2-2328, gnl\|Hg17\|chrX (106402350-106399942)
	2-2328, gnl\|Mm7\|chr4 (40860995-40872354)

	1210-1454, gnl\|bosTau2\|chr10 (54691977-54691731)
	1210-1454, gnl\|Hg17\|chrX (106401129-106400884)
	1210-1454, gnl\|Mm7\|chr4 (40871301-40871545)

	tes (1.24688)
	sug (1.01833)
	fcc (0.988924)
	fco (0.943248)
	liv (0.877706)
	elu (0.770713)
	kid (0.648677)
	ecc (0.575175)
	spl (0.572738)
	cty (0.5204)
	fhi (0.508733)
	bla (0.497389)
	pgl (0.473934)
	tbr (0.462535)
	spc (0.453463)
	amn (0.417711)
	nlu (0.383362)
	thg (0.380373)
	fbs (0.350693)
	sin (0.349895)
	cbl (0.344392)
	vin (0.332557)
	mga (0.32041)
	fat (0.294855)
	cte (0.29274)
	ldo (0.291008)
	pla (0.267344)
	tra (0.246184)
	clu (0.239292)
	cbe (0.239234)
	ebs (0.236602)
	med (0.232504)
	mgp (0.230681)
	nms (0.213858)
	hea (0.204499)
	fli (0.202881)
	nep (0.183925)
	eye (0.170503)
	cki (0.165235)
	isp (0.150376)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)