Non-Coding RNA Search

Ss1.1-Ova1-OVRM10088G06.5

Sequence:


               
               GCTGGGCTGGGCCAGGGCGGAATGGGGGTTCTGGTGGTGCTGTTAGGAGTGCTGAGCTTC
CTGGGGAGGACTTTGGGGGGCTCCCCTGCCCTCCACTGGGACAGCACCTCCTGCCACTTG
GCCAGACCTATCCCTGGAAGACCCTTGAGGTCCCTTAGCTTCCTGGGCAAGGATGCCCAA
GGACTGGCTCTGTTCCACGCCCACTGGGATGGGCACGGGAGGCTGCAGGTGTGCAGCCGG
CAGGATGAGCCAGAGCTCACTGCAGCCTATGGCGCCCTCTGTGCTGGTGAGATCACCCGG
GGCTCCTTTATCCACACCCCTGGACCTGAACTGCAGAGAGCCCTGGCCACCCTTCAGAGT
CAGTGGGAGGCCTGCCGAGGGCCTGCTGAGAGCCCAGCAGGGACCAGGGAGAAGCGAGCA
GCAGGGCAGAATGGAGTGCCTGGCATAGGGCGCCAGTGGGTGAAGAGAGGCTGGACCGTG
CCTGGCACCCTGTGGTGTGGAGTTGGGGACTCTGCTGGGAACTCATCTGAGCTGGGGGTC
TTCCAGGGCCCCGATCTCTGCTGCCGGGAACATGACCGCTGCCCACACAATGTCTCGCCC
TTCCAGTACAACTATGGCATCCGAAACTACCGATTCCACACCATCTCCCACTGCAACTGT
GATGCCAGGTTCCAGCAGTGCCTGCAGGACCAGAGGGACTCTGTCTCTGACATCATGGGT
GTAGCCTTCTTCAACGTGCTGGCGATCCCCTGCTTCGTGCTGGAGGAGCAGGAGGCCTGT
GTGGAGTGGTACTGGTGGGGCGGGTGTAGAAGGTATGGGTCTGTACCCTTTGCCCGCCTC
CAGCCCAGGACCTTCTACAACGCCTCCTGGAGCTCCCCGGCCACCTCACTGACTCCCAGC
CCCCAGAACCCAGCCCTTAGCAGGCCTCAGCCAATGCAGCACCCTCAGCAGTGGCCATCA
GAGTGGAAAGAGTCCAAGTCCCCCAGCAAAACCAACGCCACAGCCCTCCAGGCTCCAGTA
GCCTCTCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGCTGGGCCAGGGCGGAATGGGGGTTCTGGTGGTGCTGTTAGGAGTGCTGAGCTTC
CTGGGGAGGACTTTGGGGGGCTCCCCTGCCCTCCACTGGGACAGCACCTCCTGCCACTTG
GCCAGACCTATCCCTGGAAGACCCTTGAGGTCCCTTAGCTTCCTGGGCAAGGATGCCCAA
GGACTGGCTCTGTTCCACGCCCACTGGGATGGGCACGGGAGGCTGCAGGTGTGCAGCCGG
CAGGATGAGCCAGAGCTCACTGCAGCCTATGGCGCCCTCTGTGCTGGTGAGATCACCCGG
GGCTCCTTTATCCACACCCCTGGACCTGAACTGCAGAGAGCCCTGGCCACCCTTCAGAGT
CAGTGGGAGGCCTGCCGAGGGCCTGCTGAGAGCCCAGCAGGGACCAGGGAGAAGCGAGCA
GCAGGGCAGAATGGAGTGCCTGGCATAGGGCGCCAGTGGGTGAAGAGAGGCTGGACCGTG
CCTGGCACCCTGTGGTGTGGAGTTGGGGACTCTGCTGGGAACTCATCTGAGCTGGGGGTC
TTCCAGGGCCCCGATCTCTGCTGCCGGGAACATGACCGCTGCCCACACAATGTCTCGCCC
TTCCAGTACAACTATGGCATCCGAAACTACCGATTCCACACCATCTCCCACTGCAACTGT
GATGCCAGGTTCCAGCAGTGCCTGCAGGACCAGAGGGACTCTGTCTCTGACATCATGGGT
GTAGCCTTCTTCAACGTGCTGGCGATCCCCTGCTTCGTGCTGGAGGAGCAGGAGGCCTGT
GTGGAGTGGTACTGGTGGGGCGGGTGTAGAAGGTATGGGTCTGTACCCTTTGCCCGCCTC
CAGCCCAGGACCTTCTACAACGCCTCCTGGAGCTCCCCGGCCACCTCACTGACTCCCAGC
CCCCAGAACCCAGCCCTTAGCAGGCCTCAGCCAATGCAGCACCCTCAGCAGTGGCCATCA
GAGTGGAAAGAGTCCAAGTCCCCCAGCAAAACCAACGCCACAGCCCTCCAGGCTCCAGTA
GCCTCTCCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4314431|gb|AAD15617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4314431|gb|AAD15617.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-358, - strand, RNAz p=0.99992
               

               
               419-536, + strand, RNAz p=0.595954

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-358, - strand, RNAz p=0.99992
               

               
               419-536, + strand, RNAz p=0.595954

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015715, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015715, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-536, gnl|bosTau2|chr17 (44244296-44244827)
               

               
               5-536, gnl|Hg17|chr22 (29860916-29860380)
               

               
               5-536, gnl|Mm7|chr11 (3440333-3440854)
               


               
               803-1032, gnl|bosTau2|chr17 (44247145-44247374)
               

               
               803-1032, gnl|Hg17|chr22 (29858534-29858305)
               

               
               803-1032, gnl|Mm7|chr11 (3442809-3443023)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-536, gnl|bosTau2|chr17 (44244296-44244827)
               

               
               5-536, gnl|Hg17|chr22 (29860916-29860380)
               

               
               5-536, gnl|Mm7|chr11 (3440333-3440854)
               


               
               803-1032, gnl|bosTau2|chr17 (44247145-44247374)
               

               
               803-1032, gnl|Hg17|chr22 (29858534-29858305)
               

               
               803-1032, gnl|Mm7|chr11 (3442809-3443023)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	5-358, - strand, RNAz p=0.99992
	419-536, + strand, RNAz p=0.595954

	5-536, gnl\|bosTau2\|chr17 (44244296-44244827)
	5-536, gnl\|Hg17\|chr22 (29860916-29860380)
	5-536, gnl\|Mm7\|chr11 (3440333-3440854)

	803-1032, gnl\|bosTau2\|chr17 (44247145-44247374)
	803-1032, gnl\|Hg17\|chr22 (29858534-29858305)
	803-1032, gnl\|Mm7\|chr11 (3442809-3443023)