Ss1.1-Ova1-OVRM10089A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTACCGGTCCCCGCGGCGACTGCTCGCGGCGCCGGGTGCGCGCGCCTCCCGGGTGGATT CGGGCCCCGAGCGCGAGAGCGCGGCAGGGAGCGTCAGCAGACAGCTCAGGATACACAGTC CAAGGATGAACGCTCACCGTAGCACTGAGAGCGACAGGTCATTGCGGCAGGAGGCCAGCT GCCTCATGGATGAAGCCTCAGCTGTGGCCCCGGAAAAAGAAGCAAATATCCTGGCTTCTT CTGGTCTTCAGACTCTTGCTTATCCTCTAGGTCCCAGGAATGATGACCTTTCACTTGACT ATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACATGATGCCGCTTCCTGAAGACATCA AAGGCTCTTGCTTCCAAAGTGGGAATAAACGGAACCACGATCCCTTCATTGCTCCAGAGC GATTTGGAAATAGCACTGTGGGCTTTGGCAGTAACATTCATTCCCAGGCGCCAGAGAAAG TGACACTGCTTGTAGATGGCACACGTTTTGTTGTGAATCCACAAATTTTCACTGCTCATC CGGATACCATGTTGGGAAGGATGTTTGGACCAGGAAGAGAGTACAACTTCACACGGCCCA ATGAGAAGGGTGAATATGAGATTGCGGAAGGAATCAGTGCAACTGTATTTCGAACGGTGC TGGACTACTACAAAACTGGTATCATCAATTGTCCTGATGGAATCTCAATCCCAGACCTTA GAGACACGTGCGATTATCTCTGCATTAACTTTGACTTCAACACTATCCGATGTCAGGATC TGAGTGCTTTGCTGCATGAACTGTCTAACGATGGTGCTCACAAGCAGTTTGACCACTACC TCGAAGAGCTGATCCTGCCCATCATGGTGGGCTGTGCCAAGAAAGGGGAGCGGGAGTGCC ACATCGTCGTGCTGACGGATGAGGATTCTGTGGACTGGGATGAAGACCACCCCCCACCCA TGGGGGAGGAATATTCCCAAATTCTTTATAGCTCTAAGCTGTACAGGTTTTTCAAATATA TTGAGAATCGGGATGTTGCTAAAACAGTGTTAAAGGAACGGGGCCTGAAAAACATTCGCA TTGGAATTGAAGGTTATCCTACCTGTAAAGAAAAAATTAAGAGGAGACCTGGCGGCCGGT CTGAAGTCATCTATAATTATGTACAGCGCCCCTTTATCCAGATGTCATGGGAAAAGGAAG AAGGAAAAAGTCGCCATGTGGATTTCCAGTGTGTTCGGAGCAAATCCCTCACGAATCTGG TAGCTGCTGGAGAAGATGTCTTGGAGGACCAAGAGATACTAATGCATCACCCGCCCCAAG TAGATGAACTTGACCGGCTGAACGCCCCACTTTCTCAGATGGTTTCTAACGACTTTCAGG ATTAGAGTCAGCTGTGCGTCCAGCCTGTTGCCAGGCTTCTCTTGGCTGGGATGCCCCCAG CCAGTCTTTCCCATGGTTTGTCTCACACTGAGTAGGAGACAAGCTTCTCCCCCATCCTGT CCTTTCCTTCCATAATTAATGTGTGTTCTTTTCAGTTAGTCTGTGCCTCCGGCAGGGGAT GGAAAAGCACTCACTGGTAATTAAGCTACCAGCTTTGCAGCAGCCCTGGTAACTTGAACA TTTTGGGTCTGGTGCTGTTCACTGAGTCTTTGCATAACTGCAAAAGCAGGAAAGGAAGTC AAGACTTCCGTTGCCTCATATTCAGTCCTCATCCTTTTCACTGTTACTGCTTTTTTTTTA TTTCATACCAGGGCAAATTACTTAGCAGCAAAGGGACCAAACTTAAAAGGAGACAATCTC TATTTTGTATAAGCACGCACTAATGGATGCCCATTAGAGGTTAATGAAGATACCATTCCT GGTGGCCTCTGTGTGGAGGTTGTGTCTGGAAAGAACTTGGCTCTCATTCAAAATGTCCAA AAGGGAGTTCCCGTTGTGGCTCAATGGTAAGGAACCTGACTAGTATCCATGAGGATGCGG GTTCAATCCCTGGCTCTTCTCAGTGGGTTAAGGATCTGGTGTTGCCGTGAGCTGTGGTGT AGGTCGTAGTTTCAGCTTGGTTCCTATGTTGCTGTGGCTGCAGCTCCAATTCAACCCCTA GCCTGGGAACCTCCGTATGGAGTGGGCATGGCCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTACCGGTCCCCGCGGCGACTGCTCGCGGCGCCGGGTGCGCGCGCCTCCCGGGTGGATT CGGGCCCCGAGCGCGAGAGCGCGGCAGGGAGCGTCAGCAGACAGCTCAGGATACACAGTC CAAGGATGAACGCTCACCGTAGCACTGAGAGCGACAGGTCATTGCGGCAGGAGGCCAGCT GCCTCATGGATGAAGCCTCAGCTGTGGCCCCGGAAAAAGAAGCAAATATCCTGGCTTCTT CTGGTCTTCAGACTCTTGCTTATCCTCTAGGTCCCAGGAATGATGACCTTTCACTTGACT ATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACATGATGCCGCTTCCTGAAGACATCA AAGGCTCTTGCTTCCAAAGTGGGAATAAACGGAACCACGATCCCTTCATTGCTCCAGAGC GATTTGGAAATAGCACTGTGGGCTTTGGCAGTAACATTCATTCCCAGGCGCCAGAGAAAG TGACACTGCTTGTAGATGGCACACGTTTTGTTGTGAATCCACAAATTTTCACTGCTCATC CGGATACCATGTTGGGAAGGATGTTTGGACCAGGAAGAGAGTACAACTTCACACGGCCCA ATGAGAAGGGTGAATATGAGATTGCGGAAGGAATCAGTGCAACTGTATTTCGAACGGTGC TGGACTACTACAAAACTGGTATCATCAATTGTCCTGATGGAATCTCAATCCCAGACCTTA GAGACACGTGCGATTATCTCTGCATTAACTTTGACTTCAACACTATCCGATGTCAGGATC TGAGTGCTTTGCTGCATGAACTGTCTAACGATGGTGCTCACAAGCAGTTTGACCACTACC TCGAAGAGCTGATCCTGCCCATCATGGTGGGCTGTGCCAAGAAAGGGGAGCGGGAGTGCC ACATCGTCGTGCTGACGGATGAGGATTCTGTGGACTGGGATGAAGACCACCCCCCACCCA TGGGGGAGGAATATTCCCAAATTCTTTATAGCTCTAAGCTGTACAGGTTTTTCAAATATA TTGAGAATCGGGATGTTGCTAAAACAGTGTTAAAGGAACGGGGCCTGAAAAACATTCGCA TTGGAATTGAAGGTTATCCTACCTGTAAAGAAAAAATTAAGAGGAGACCTGGCGGCCGGT CTGAAGTCATCTATAATTATGTACAGCGCCCCTTTATCCAGATGTCATGGGAAAAGGAAG AAGGAAAAAGTCGCCATGTGGATTTCCAGTGTGTTCGGAGCAAATCCCTCACGAATCTGG TAGCTGCTGGAGAAGATGTCTTGGAGGACCAAGAGATACTAATGCATCACCCGCCCCAAG TAGATGAACTTGACCGGCTGAACGCCCCACTTTCTCAGATGGTTTCTAACGACTTTCAGG ATTAGAGTCAGCTGTGCGTCCAGCCTGTTGCCAGGCTTCTCTTGGCTGGGATGCCCCCAG CCAGTCTTTCCCATGGTTTGTCTCACACTGAGTAGGAGACAAGCTTCTCCCCCATCCTGT CCTTTCCTTCCATAATTAATGTGTGTTCTTTTCAGTTAGTCTGTGCCTCCGGCAGGGGAT GGAAAAGCACTCACTGGTAATTAAGCTACCAGCTTTGCAGCAGCCCTGGTAACTTGAACA TTTTGGGTCTGGTGCTGTTCACTGAGTCTTTGCATAACTGCAAAAGCAGGAAAGGAAGTC AAGACTTCCGTTGCCTCATATTCAGTCCTCATCCTTTTCACTGTTACTGCTTTTTTTTTA TTTCATACCAGGGCAAATTACTTAGCAGCAAAGGGACCAAACTTAAAAGGAGACAATCTC TATTTTGTATAAGCACGCACTAATGGATGCCCATTAGAGGTTAATGAAGATACCATTCCT GGTGGCCTCTGTGTGGAGGTTGTGTCTGGAAAGAACTTGGCTCTCATTCAAAATGTCCAA AAGGGAGTTCCCGTTGTGGCTCAATGGTAAGGAACCTGACTAGTATCCATGAGGATGCGG GTTCAATCCCTGGCTCTTCTCAGTGGGTTAAGGATCTGGTGTTGCCGTGAGCTGTGGTGT AGGTCGTAGTTTCAGCTTGGTTCCTATGTTGCTGTGGCTGCAGCTCCAATTCAACCCCTA GCCTGGGAACCTCCGTATGGAGTGGGCATGGCCCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 324-443, + strand, RNAz p=0.699459 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 324-443, + strand, RNAz p=0.699459 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AY305862, + |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 285-560, gnl|bosTau2|chr23 (9665515-9665790) | |
| 285-560, gnl|Hg17|chr6 (36550543-36550818) | |
| 285-560, gnl|Mm7|chr17 (27148515-27148790) | |
| 784-981, gnl|bosTau2|chr15 (23334458-23334655) | |
| 784-981, gnl|canFam2|chr21 (39522234-39522023) | |
| 784-981, gnl|danRer3|chr7 (54733878-54734089) | |
| 784-981, gnl|dasNov1|scaffold_1106 (296-500) | |
| 784-981, gnl|echTel1|scaffold_324970 (16311-16517) | |
| 784-981, gnl|fr1|chrUn (36938732-36938518) | |
| 784-981, gnl|galGal2|chr5 (5078585-5078784) | |
| 784-981, gnl|Hg17|chr11 (13383979-13383782) | |
| 784-981, gnl|hg17|chr12 (51429535-51429744) | |
| 784-981, gnl|loxAfr1|scaffold_4055 (3611-3821) | |
| 784-981, gnl|Mm7|chr7 (109242000-109241803) | |
| 784-981, gnl|mm7|chrX (162551325-162551513) | |
| 784-981, gnl|monDom2|scaffold_10 (64165727-64165523) | |
| 784-981, gnl|oryCun1|scaffold_178016 (66661-66461) | |
| 784-981, gnl|panTro1|chr10 (52653171-52653380) | |
| 784-981, gnl|rheMac2|chr14 (58489581-58489777) | |
| 784-981, gnl|rn3|chrX (134153209-134153397) | |
| 784-981, gnl|tetNig1|chr5 (6196824-6196584) | |
| 784-981, gnl|xenTro1|scaffold_37 (2753789-2753991) | |
| 1091-1333, gnl|bosTau2|chr15 (23340223-23340465) | |
| 1091-1333, gnl|canFam2|chr21 (39516661-39516366) | |
| 1091-1333, gnl|canFam2|chr21 (39516388-39516685) | |
| 1091-1333, gnl|danRer3|chr7 (54736989-54737262) | |
| 1091-1333, gnl|danRer3|chr7 (54737262-54736953) | |
| 1091-1333, gnl|dasNov1|scaffold_1106 (8606-8901) | |
| 1091-1333, gnl|dasNov1|scaffold_1106 (8879-8582) | |
| 1091-1333, gnl|echTel1|scaffold_324970 (28133-28425) | |
| 1091-1333, gnl|echTel1|scaffold_324970 (28403-28105) | |
| 1091-1333, gnl|fr1|chrUn (36937789-36937473) | |
| 1091-1333, gnl|fr1|chrUn (274364081-274363808) | |
| 1091-1333, gnl|galGal2|chr5 (5080938-5081233) | |
| 1091-1333, gnl|galGal2|chr5 (5081211-5080932) | |
| 1091-1333, gnl|hg17|chr11 (13366994-13367291) | |
| 1091-1333, gnl|Hg17|chr11 (13367266-13367024) | |
| 1091-1333, gnl|hg17|chr12 (51429862-51430162) | |
| 1091-1333, gnl|loxAfr1|scaffold_4055 (11736-12027) | |
| 1091-1333, gnl|loxAfr1|scaffold_4055 (12005-11708) | |
| 1091-1333, gnl|mm7|chr7 (109232494-109232791) | |
| 1091-1333, gnl|Mm7|chr7 (109232766-109232524) | |
| 1091-1333, gnl|mm7|chrX (162551631-162551902) | |
| 1091-1333, gnl|monDom2|scaffold_10 (64159737-64159442) | |
| 1091-1333, gnl|monDom2|scaffold_10 (64159464-64159757) | |
| 1091-1333, gnl|oryCun1|scaffold_207555 (84079-84374) | |
| 1091-1333, gnl|oryCun1|scaffold_207555 (84352-84058) | |
| 1091-1333, gnl|panTro1|chr10 (52656059-52656353) | |
| 1091-1333, gnl|panTro1|chr9 (13630965-13631262) | |
| 1091-1333, gnl|rheMac2|chr14 (58500038-58500333) | |
| 1091-1333, gnl|rheMac2|chr14 (58500311-58500014) | |
| 1091-1333, gnl|rn3|chr1 (171284267-171284564) | |
| 1091-1333, gnl|rn3|chrX (134153512-134153806) | |
| 1091-1333, gnl|tetNig1|chr13 (506651-506389) | |
| 1091-1333, gnl|tetNig1|chr5 (6195960-6195644) | |
| 1091-1333, gnl|xenTro1|scaffold_37 (2755153-2755449) | |
| 1091-1333, gnl|xenTro1|scaffold_37 (2755426-2755136) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 285-560, gnl|bosTau2|chr23 (9665515-9665790) | |
| 285-560, gnl|Hg17|chr6 (36550543-36550818) | |
| 285-560, gnl|Mm7|chr17 (27148515-27148790) | |
| 784-981, gnl|bosTau2|chr15 (23334458-23334655) | |
| 784-981, gnl|canFam2|chr21 (39522234-39522023) | |
| 784-981, gnl|danRer3|chr7 (54733878-54734089) | |
| 784-981, gnl|dasNov1|scaffold_1106 (296-500) | |
| 784-981, gnl|echTel1|scaffold_324970 (16311-16517) | |
| 784-981, gnl|fr1|chrUn (36938732-36938518) | |
| 784-981, gnl|galGal2|chr5 (5078585-5078784) | |
| 784-981, gnl|Hg17|chr11 (13383979-13383782) | |
| 784-981, gnl|hg17|chr12 (51429535-51429744) | |
| 784-981, gnl|loxAfr1|scaffold_4055 (3611-3821) | |
| 784-981, gnl|Mm7|chr7 (109242000-109241803) | |
| 784-981, gnl|mm7|chrX (162551325-162551513) | |
| 784-981, gnl|monDom2|scaffold_10 (64165727-64165523) | |
| 784-981, gnl|oryCun1|scaffold_178016 (66661-66461) | |
| 784-981, gnl|panTro1|chr10 (52653171-52653380) | |
| 784-981, gnl|rheMac2|chr14 (58489581-58489777) | |
| 784-981, gnl|rn3|chrX (134153209-134153397) | |
| 784-981, gnl|tetNig1|chr5 (6196824-6196584) | |
| 784-981, gnl|xenTro1|scaffold_37 (2753789-2753991) | |
| 1091-1333, gnl|bosTau2|chr15 (23340223-23340465) | |
| 1091-1333, gnl|canFam2|chr21 (39516661-39516366) | |
| 1091-1333, gnl|canFam2|chr21 (39516388-39516685) | |
| 1091-1333, gnl|danRer3|chr7 (54736989-54737262) | |
| 1091-1333, gnl|danRer3|chr7 (54737262-54736953) | |
| 1091-1333, gnl|dasNov1|scaffold_1106 (8606-8901) | |
| 1091-1333, gnl|dasNov1|scaffold_1106 (8879-8582) | |
| 1091-1333, gnl|echTel1|scaffold_324970 (28133-28425) | |
| 1091-1333, gnl|echTel1|scaffold_324970 (28403-28105) | |
| 1091-1333, gnl|fr1|chrUn (36937789-36937473) | |
| 1091-1333, gnl|fr1|chrUn (274364081-274363808) | |
| 1091-1333, gnl|galGal2|chr5 (5080938-5081233) | |
| 1091-1333, gnl|galGal2|chr5 (5081211-5080932) | |
| 1091-1333, gnl|hg17|chr11 (13366994-13367291) | |
| 1091-1333, gnl|Hg17|chr11 (13367266-13367024) | |
| 1091-1333, gnl|hg17|chr12 (51429862-51430162) | |
| 1091-1333, gnl|loxAfr1|scaffold_4055 (11736-12027) | |
| 1091-1333, gnl|loxAfr1|scaffold_4055 (12005-11708) | |
| 1091-1333, gnl|mm7|chr7 (109232494-109232791) | |
| 1091-1333, gnl|Mm7|chr7 (109232766-109232524) | |
| 1091-1333, gnl|mm7|chrX (162551631-162551902) | |
| 1091-1333, gnl|monDom2|scaffold_10 (64159737-64159442) | |
| 1091-1333, gnl|monDom2|scaffold_10 (64159464-64159757) | |
| 1091-1333, gnl|oryCun1|scaffold_207555 (84079-84374) | |
| 1091-1333, gnl|oryCun1|scaffold_207555 (84352-84058) | |
| 1091-1333, gnl|panTro1|chr10 (52656059-52656353) | |
| 1091-1333, gnl|panTro1|chr9 (13630965-13631262) | |
| 1091-1333, gnl|rheMac2|chr14 (58500038-58500333) | |
| 1091-1333, gnl|rheMac2|chr14 (58500311-58500014) | |
| 1091-1333, gnl|rn3|chr1 (171284267-171284564) | |
| 1091-1333, gnl|rn3|chrX (134153512-134153806) | |
| 1091-1333, gnl|tetNig1|chr13 (506651-506389) | |
| 1091-1333, gnl|tetNig1|chr5 (6195960-6195644) | |
| 1091-1333, gnl|xenTro1|scaffold_37 (2755153-2755449) | |
| 1091-1333, gnl|xenTro1|scaffold_37 (2755426-2755136) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| spl (0.572738) | |
| clu (0.358938) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| ski (0.146735) | |
| cov (0.132153) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.572738) | |
| clu (0.358938) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| ski (0.146735) | |
| cov (0.132153) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |