Non-Coding RNA Search

Ss1.1-Ova1-OVRM10089D11.5

Sequence:


               
               AAGAGCCTCCCCGCCACTCCAGGGCCCCAGACCCCACGGAGGCACTCCAGCTTCAGAGCG
TTCTATCGAGAATTGCCTGCACCCTGTGCCTTTCATCCAGACTAAATTGGCTGCATTGAC
TCTTGTTCAAGGGACGATCGCTTCAGATAGCTCGTTACAGTTCCCCTCACAGCCTTCCTG
GTGTGCACGTCACAAGTCCATAAGATCAGGAGCCAAGTCGGTTTTGCTCTCGGGCTCTTG
GGGCCACCAGCCAAGACCCTCCTCTCCCGTGGATAACCGGCCGGATGACGATGAACGAGG
TGAAGGAGTCCCTGCGGAGCGTGGAGCAGAAGTACAGGCTCTTCCAGCAGCAGCAGTTCA
CCTTCATCGCCGCCCTGGAGCACTGCAGGGAGGACGCCCACGACAAGATCCGGCCCATCT
CCAGCATCGGACAGGTGCAGAGCTACATGGAGCATCACTGCCACAATGCCACGGACCGGC
GCATCCTGCTCATGTTCCTGGACATCTGCACGGAGCTCAGCAAGCTGTGCCAGCACTTCG
AGGCCCTGCACGCCGGCACCCCCGTCACCAACAACCTCCTGGAGAAGTGCAAAAGCCTCG
TCAGCCACAGCAACGACTTAAGCAGCCTGCGGGCAAAATACCCTCACGACGTGGTGAACC
ACCTCAGCTGCGACGAGGCCAGGAACCACTACGGGGGTGTGGTCAGCCTGATCCCCGTCG
TCCTGGACTTGAATGAAGAAGTGGGGTCGCCCACTCCGAGAAGCTGCCCCGAAAAGCACT
GCAGCATGGGGCGACTTAGCTTCTGTATTCTTGCTTCCTCGGGGGCGACCCAATCAAGAT
AAAACGTGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCCTCCCCGCCACTCCAGGGCCCCAGACCCCACGGAGGCACTCCAGCTTCAGAGCG
TTCTATCGAGAATTGCCTGCACCCTGTGCCTTTCATCCAGACTAAATTGGCTGCATTGAC
TCTTGTTCAAGGGACGATCGCTTCAGATAGCTCGTTACAGTTCCCCTCACAGCCTTCCTG
GTGTGCACGTCACAAGTCCATAAGATCAGGAGCCAAGTCGGTTTTGCTCTCGGGCTCTTG
GGGCCACCAGCCAAGACCCTCCTCTCCCGTGGATAACCGGCCGGATGACGATGAACGAGG
TGAAGGAGTCCCTGCGGAGCGTGGAGCAGAAGTACAGGCTCTTCCAGCAGCAGCAGTTCA
CCTTCATCGCCGCCCTGGAGCACTGCAGGGAGGACGCCCACGACAAGATCCGGCCCATCT
CCAGCATCGGACAGGTGCAGAGCTACATGGAGCATCACTGCCACAATGCCACGGACCGGC
GCATCCTGCTCATGTTCCTGGACATCTGCACGGAGCTCAGCAAGCTGTGCCAGCACTTCG
AGGCCCTGCACGCCGGCACCCCCGTCACCAACAACCTCCTGGAGAAGTGCAAAAGCCTCG
TCAGCCACAGCAACGACTTAAGCAGCCTGCGGGCAAAATACCCTCACGACGTGGTGAACC
ACCTCAGCTGCGACGAGGCCAGGAACCACTACGGGGGTGTGGTCAGCCTGATCCCCGTCG
TCCTGGACTTGAATGAAGAAGTGGGGTCGCCCACTCCGAGAAGCTGCCCCGAAAAGCACT
GCAGCATGGGGCGACTTAGCTTCTGTATTCTTGCTTCCTCGGGGGCGACCCAATCAAGAT
AAAACGTGTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863670|ref|XP_587223.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863670|ref|XP_587223.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               65-255, gnl|bosTau2|chr11 (83473601-83473793)
               

               
               65-255, gnl|canFam2|chr9 (54812368-54811903)
               

               
               65-255, gnl|dasNov1|scaffold_41580 (1678-1218)
               

               
               65-255, gnl|hg17|chr9 (132784873-132785339)
               

               
               65-255, gnl|Hg17|chr9 (132785221-132785385)
               

               
               65-255, gnl|loxAfr1|scaffold_20893 (32808-33276)
               

               
               65-255, gnl|mm7|chr2 (28705912-28705465)
               

               
               65-255, gnl|Mm7|chr2 (28705580-28705386)
               

               
               65-255, gnl|monDom2|scaffold_51 (8740376-8740855)
               

               
               65-255, gnl|panTro1|chr11 (117677233-117677699)
               

               
               65-255, gnl|rheMac2|chr15 (5756152-5755689)
               

               
               65-255, gnl|rn3|chr3 (7686017-7685585)
               


               
               432-640, gnl|bosTau2|chr11 (83480208-83480416)
               

               
               432-640, gnl|Hg17|chr9 (132792307-132792515)
               

               
               432-640, gnl|Mm7|chr2 (28701140-28700932)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-255, gnl|bosTau2|chr11 (83473601-83473793)
               

               
               65-255, gnl|canFam2|chr9 (54812368-54811903)
               

               
               65-255, gnl|dasNov1|scaffold_41580 (1678-1218)
               

               
               65-255, gnl|hg17|chr9 (132784873-132785339)
               

               
               65-255, gnl|Hg17|chr9 (132785221-132785385)
               

               
               65-255, gnl|loxAfr1|scaffold_20893 (32808-33276)
               

               
               65-255, gnl|mm7|chr2 (28705912-28705465)
               

               
               65-255, gnl|Mm7|chr2 (28705580-28705386)
               

               
               65-255, gnl|monDom2|scaffold_51 (8740376-8740855)
               

               
               65-255, gnl|panTro1|chr11 (117677233-117677699)
               

               
               65-255, gnl|rheMac2|chr15 (5756152-5755689)
               

               
               65-255, gnl|rn3|chr3 (7686017-7685585)
               


               
               432-640, gnl|bosTau2|chr11 (83480208-83480416)
               

               
               432-640, gnl|Hg17|chr9 (132792307-132792515)
               

               
               432-640, gnl|Mm7|chr2 (28701140-28700932)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	65-255, gnl\|bosTau2\|chr11 (83473601-83473793)
	65-255, gnl\|canFam2\|chr9 (54812368-54811903)
	65-255, gnl\|dasNov1\|scaffold_41580 (1678-1218)
	65-255, gnl\|hg17\|chr9 (132784873-132785339)
	65-255, gnl\|Hg17\|chr9 (132785221-132785385)
	65-255, gnl\|loxAfr1\|scaffold_20893 (32808-33276)
	65-255, gnl\|mm7\|chr2 (28705912-28705465)
	65-255, gnl\|Mm7\|chr2 (28705580-28705386)
	65-255, gnl\|monDom2\|scaffold_51 (8740376-8740855)
	65-255, gnl\|panTro1\|chr11 (117677233-117677699)
	65-255, gnl\|rheMac2\|chr15 (5756152-5755689)
	65-255, gnl\|rn3\|chr3 (7686017-7685585)

	432-640, gnl\|bosTau2\|chr11 (83480208-83480416)
	432-640, gnl\|Hg17\|chr9 (132792307-132792515)
	432-640, gnl\|Mm7\|chr2 (28701140-28700932)