Non-Coding RNA Search

Ss1.1-Ova1-OVRM10090F01.5

Sequence:


               
               GGCGGCACAGCCCCGGCCCTGGGAGCCCAGACTGGGAGGCAGGAGCGGAGACCCGGGGCA
CTGGCCTCGGCTTCAAGCGCTGGGCCACCCAGGAGCTGTACCACCCCTCTGGTGAGGATG
CCGAGACAGGCCTCAGCTCTCCCAGCTCAGAGTCCATCACTTCCCAGGGCCCAGTGTCGG
CCACGGTGGAAGTCACCAGTCCCAGGGGCTTTGCCCAGTCCCACGTGCTGGAGGACGTCA
GTCAGTCTGTGAGGCACATTAAAATAGCGCCCCCTGGAGTTTGGAGGACTGAGCACGTCT
CACCCGAAGGACCCTCTTCACAGGTGGTGGAGATGGACGTGAGTAACGTAGAGGCGACCC
CCCGCTGGACCCAAGAGGCCACAGTCCTCTTCCCTGCAGGGATGGAAGCAGAAGCTCATG
GTGTGTCTGACCGTGGTGCTTGGAGAGATGCTGGCAGTAGGAATGACCTGGCTGCCAGCG
TGAGCTTTCAAGGCTCTGCTGGGGACAGACACCAGGCCCCCGGGGAAAAGGGCAAGGAGC
AGGCTGAGTTTGATAAGACGGTGCAGCTACAGAGGATGGTAGACCAGAGGTCGGTGATTT
CCGATGAAAAGAAGGTTGCTCTCCTCTATCTAGACAATCAGGAGGAGGAGAATGAGGGAC
ACTGGTTTTGATAAATACTGTGTTTTAAATACCATCTCTTTGGTGAAGTACCAACACACA
AAGGCCTTTACTTTAAGGGAGGGAGGTGTACTCCTTCTTAAAACCTCCCTTCTTTTTCAC
TTTCTTCAAAGAGTCCTCTAGACAATGTCAGCTTACTTCATAATCAGTAAAAATTTCAGA
CTAATTCATGCCTTAAAAGGCATTGGAATTTACTGAGTTGGGACTTTGACAAATATTTTT
TATCTTTTCAGTCTTAAAAGTTCCTTTTTCTGGAGTTTTCTTTCCACTTCTAGGGATGAT
TTCCACCATTTTTGCACCTGGTCACAGAAATGCCTCGCATCTGTTTGAAACTATAATTAA
CTAGGTAAGATTCCTAAATGGTGACAGGATTAAAGTAATCTATTTAAGAATAAATTTAAT
TTGCATGTGCTAATAAGATATAGTAAACTAACATGTTAAGGGAAAAATGAATATTTGTTT
TTCCTCTTTCCAAAGTCTTTTCCAAAAGAAATTGTAGGAAATAAGATTTTTAAAAAATCT
TGGAGTTCCCATTGTGGTTCAGTGGGTTATGAACCTGACTAGTATCCATGAGGATGAGGG
TTTGATCCCTGGCCTCACTCAGAGGGTTAAGGATCCAGCATTGCTGTGAGCTGAGGTGTA
GGTTGCAAATGTGGCTTGGATCCTGTGTTGCTGTGGTTGTGGCGTCGGCCAGAGGCTGCA
GCTCCAATTCAACCCCTTGCCTGGGAACTTCCATATGCCACAGGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCACAGCCCCGGCCCTGGGAGCCCAGACTGGGAGGCAGGAGCGGAGACCCGGGGCA
CTGGCCTCGGCTTCAAGCGCTGGGCCACCCAGGAGCTGTACCACCCCTCTGGTGAGGATG
CCGAGACAGGCCTCAGCTCTCCCAGCTCAGAGTCCATCACTTCCCAGGGCCCAGTGTCGG
CCACGGTGGAAGTCACCAGTCCCAGGGGCTTTGCCCAGTCCCACGTGCTGGAGGACGTCA
GTCAGTCTGTGAGGCACATTAAAATAGCGCCCCCTGGAGTTTGGAGGACTGAGCACGTCT
CACCCGAAGGACCCTCTTCACAGGTGGTGGAGATGGACGTGAGTAACGTAGAGGCGACCC
CCCGCTGGACCCAAGAGGCCACAGTCCTCTTCCCTGCAGGGATGGAAGCAGAAGCTCATG
GTGTGTCTGACCGTGGTGCTTGGAGAGATGCTGGCAGTAGGAATGACCTGGCTGCCAGCG
TGAGCTTTCAAGGCTCTGCTGGGGACAGACACCAGGCCCCCGGGGAAAAGGGCAAGGAGC
AGGCTGAGTTTGATAAGACGGTGCAGCTACAGAGGATGGTAGACCAGAGGTCGGTGATTT
CCGATGAAAAGAAGGTTGCTCTCCTCTATCTAGACAATCAGGAGGAGGAGAATGAGGGAC
ACTGGTTTTGATAAATACTGTGTTTTAAATACCATCTCTTTGGTGAAGTACCAACACACA
AAGGCCTTTACTTTAAGGGAGGGAGGTGTACTCCTTCTTAAAACCTCCCTTCTTTTTCAC
TTTCTTCAAAGAGTCCTCTAGACAATGTCAGCTTACTTCATAATCAGTAAAAATTTCAGA
CTAATTCATGCCTTAAAAGGCATTGGAATTTACTGAGTTGGGACTTTGACAAATATTTTT
TATCTTTTCAGTCTTAAAAGTTCCTTTTTCTGGAGTTTTCTTTCCACTTCTAGGGATGAT
TTCCACCATTTTTGCACCTGGTCACAGAAATGCCTCGCATCTGTTTGAAACTATAATTAA
CTAGGTAAGATTCCTAAATGGTGACAGGATTAAAGTAATCTATTTAAGAATAAATTTAAT
TTGCATGTGCTAATAAGATATAGTAAACTAACATGTTAAGGGAAAAATGAATATTTGTTT
TTCCTCTTTCCAAAGTCTTTTCCAAAAGAAATTGTAGGAAATAAGATTTTTAAAAAATCT
TGGAGTTCCCATTGTGGTTCAGTGGGTTATGAACCTGACTAGTATCCATGAGGATGAGGG
TTTGATCCCTGGCCTCACTCAGAGGGTTAAGGATCCAGCATTGCTGTGAGCTGAGGTGTA
GGTTGCAAATGTGGCTTGGATCCTGTGTTGCTGTGGTTGTGGCGTCGGCCAGAGGCTGCA
GCTCCAATTCAACCCCTTGCCTGGGAACTTCCATATGCCACAGGTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|27769282|gb|AAH42785.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|27769282|gb|AAH42785.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               830-942, + strand, RNAz p=0.582684

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               830-942, + strand, RNAz p=0.582684

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               331-1197, gnl|bosTau2|chr21 (2337733-2338598)
               

               
               331-1197, gnl|Hg17|chr15 (97490476-97491297)
               

               
               331-1197, gnl|Mm7|chr7 (63589534-63588680)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               331-1197, gnl|bosTau2|chr21 (2337733-2338598)
               

               
               331-1197, gnl|Hg17|chr15 (97490476-97491297)
               

               
               331-1197, gnl|Mm7|chr7 (63589534-63588680)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               ldo (1.84305)
               

               
               ste (1.21687)
               

               
               ssp (0.948638)
               

               
               bla (0.87043)
               

               
               nms (0.427716)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (1.84305)
               

               
               ste (1.21687)
               

               
               ssp (0.948638)
               

               
               bla (0.87043)
               

               
               nms (0.427716)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               cst (0.280073)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)

	331-1197, gnl\|bosTau2\|chr21 (2337733-2338598)
	331-1197, gnl\|Hg17\|chr15 (97490476-97491297)
	331-1197, gnl\|Mm7\|chr7 (63589534-63588680)

	ldo (1.84305)
	ste (1.21687)
	ssp (0.948638)
	bla (0.87043)
	nms (0.427716)
	tbr (0.308356)
	sme (0.305437)
	cst (0.280073)
	ton (0.1755)
	cut (0.169924)
	nco (0.161734)
	isp (0.150376)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)