Non-Coding RNA Search

Ss1.1-Ova1-OVRM10090G03.5

Sequence:


               
               ATGGCGGCCGAGTTGGAGTATGAGTCGGTCCTGTGTGTGAAGCCCGACGTCAGCGTCTAC
CGGATTCCGCCCCGGGCCTCCAACCGCGGTTACAGGGCATCTGACTGGAAATTAGATCAA
CCTGATTGGACAGGTCGCCTCCGAATCACTTCCAAAGGGAAGATTGCGTATATCAAACTC
GAGGATAAAGTTTCAGGGGAGCTTTTTGCTCAGGCACCAGTAGAACAATATCCTGGTATC
GCTGTGGAGACAGTGGCAGATTCCAGCCGCTACTTTGTAATCCGGATCCAGGATGGTACT
GGGCGCAGTGCTTTCATTGGCATTGGCTTCACAGATCGAGGTGATGCCTTCGACTTTAAT
GTCTCTTTACAAGACCACTTCAAGTGGGTAAAGCAGGAATCTGAGATTTCCAAAGAATCT
CAGGAAATGGACGCTCGTCCCAAGTTGGATCTGGGTTTCAAGGAAGGACAGACCATCAAG
TTGAGTATTGGGAACATTACAACCAAGAAAGGAGGTGCTTCTAAGCCCAAGACTGCAGGG
ACTGGGGGCCTGAGCTTACTCCCACCGCCACCTGGAGGCAAGGTCACAATTCCCCCGCCG
TCCTCTTCAGTTGCCATCAGCAATCATGTCACTCCACCACCCATACCGAAATCTAATCAT
GGAGATATCCTTTTAGATTTGGATTCTCCCGCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCGGCCGAGTTGGAGTATGAGTCGGTCCTGTGTGTGAAGCCCGACGTCAGCGTCTAC
CGGATTCCGCCCCGGGCCTCCAACCGCGGTTACAGGGCATCTGACTGGAAATTAGATCAA
CCTGATTGGACAGGTCGCCTCCGAATCACTTCCAAAGGGAAGATTGCGTATATCAAACTC
GAGGATAAAGTTTCAGGGGAGCTTTTTGCTCAGGCACCAGTAGAACAATATCCTGGTATC
GCTGTGGAGACAGTGGCAGATTCCAGCCGCTACTTTGTAATCCGGATCCAGGATGGTACT
GGGCGCAGTGCTTTCATTGGCATTGGCTTCACAGATCGAGGTGATGCCTTCGACTTTAAT
GTCTCTTTACAAGACCACTTCAAGTGGGTAAAGCAGGAATCTGAGATTTCCAAAGAATCT
CAGGAAATGGACGCTCGTCCCAAGTTGGATCTGGGTTTCAAGGAAGGACAGACCATCAAG
TTGAGTATTGGGAACATTACAACCAAGAAAGGAGGTGCTTCTAAGCCCAAGACTGCAGGG
ACTGGGGGCCTGAGCTTACTCCCACCGCCACCTGGAGGCAAGGTCACAATTCCCCCGCCG
TCCTCTTCAGTTGCCATCAGCAATCATGTCACTCCACCACCCATACCGAAATCTAATCAT
GGAGATATCCTTTTAGATTTGGATTCTCCCGCTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34858413|ref|XP_232389.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34858413|ref|XP_232389.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               391-507, + strand, RNAz p=0.829801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-507, + strand, RNAz p=0.829801

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-644, gnl|bosTau2|chr11 (7972947-7972323)
               

               
               1-644, gnl|Hg17|chr2 (74488813-74489623)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr11 (7972947-7972323)
               

               
               1-644, gnl|Hg17|chr2 (74488813-74489623)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-644, gnl\|bosTau2\|chr11 (7972947-7972323)
	1-644, gnl\|Hg17\|chr2 (74488813-74489623)