Non-Coding RNA Search

Ss1.1-Ova1-OVRM10091C09.5

Sequence:


               
               AGTGTGTTTGGAGAATTTGTTCTGTCTCATGTCCTGTGTCTTTTGTAACAGGGTAGTTGG
CTCTACTGGCAGCATTCAAATAGTTAAGCTTGTCTTAAGGAAATAAGCAACCTCAGCCCT
CCCTCCTTCCCTTTCTCAACCAGTCTACGGCTTCCTCTTACAGTTTCTGTAATGGTTGTT
CTCATGGCAGCTCAAAGCTGCTGGGCTCTGCCCTGCTGGCATGAGCCCTTCCTTCCGTGA
GAGCACACTTCCTGGCATGGGGGTGGAACCATGTCGGTAAGATGGGGTCGGTTTCATGAA
GCACCCCTCGTAACAGTGAGAATCATAGGACCAAAACATGGGGAGGTAAGAGCCTGACTT
CTTTAAAGCACTAAATTCTAATAAACACAGGAAGAGATGGTAGAGTTTATTGTTTTGTTT
TGACCCTTGGAAGAGCTAGTTTGGATTGTTTCAAAGAGTTAGGAAATTATTAATTTACTC
AGATTTTGAGAGCATTGCAAGGAAGGCTTGAGAGAATAAGTTAGTTGCCGTAGAAGATTT
TCTTATCTCTTGAAACATGCTTTTTAGCTTTCTTCAGCAAAATGTCAGGTGCTGTTCAGT
TTAACATTTCATGTGTGGAGAAGCCTTCATCAAAAGGTAGTTAAAAGAAAAAAGTTACAC
GAAAAACTCAATTTTCGTGGTTGATTTTTATTAAAGTTTTACATACTTTAACAGTTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTGTTTGGAGAATTTGTTCTGTCTCATGTCCTGTGTCTTTTGTAACAGGGTAGTTGG
CTCTACTGGCAGCATTCAAATAGTTAAGCTTGTCTTAAGGAAATAAGCAACCTCAGCCCT
CCCTCCTTCCCTTTCTCAACCAGTCTACGGCTTCCTCTTACAGTTTCTGTAATGGTTGTT
CTCATGGCAGCTCAAAGCTGCTGGGCTCTGCCCTGCTGGCATGAGCCCTTCCTTCCGTGA
GAGCACACTTCCTGGCATGGGGGTGGAACCATGTCGGTAAGATGGGGTCGGTTTCATGAA
GCACCCCTCGTAACAGTGAGAATCATAGGACCAAAACATGGGGAGGTAAGAGCCTGACTT
CTTTAAAGCACTAAATTCTAATAAACACAGGAAGAGATGGTAGAGTTTATTGTTTTGTTT
TGACCCTTGGAAGAGCTAGTTTGGATTGTTTCAAAGAGTTAGGAAATTATTAATTTACTC
AGATTTTGAGAGCATTGCAAGGAAGGCTTGAGAGAATAAGTTAGTTGCCGTAGAAGATTT
TCTTATCTCTTGAAACATGCTTTTTAGCTTTCTTCAGCAAAATGTCAGGTGCTGTTCAGT
TTAACATTTCATGTGTGGAGAAGCCTTCATCAAAAGGTAGTTAAAAGAAAAAAGTTACAC
GAAAAACTCAATTTTCGTGGTTGATTTTTATTAAAGTTTTACATACTTTAACAGTTACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               123-281, + strand, RNAz p=0.991507

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-281, + strand, RNAz p=0.991507

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-717, gnl|bosTau2|chr21 (9784041-9784744)
               

               
               10-717, gnl|Hg17|chr15 (84034015-84034710)
               

               
               10-717, gnl|Mm7|chr7 (71553826-71554506)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-717, gnl|bosTau2|chr21 (9784041-9784744)
               

               
               10-717, gnl|Hg17|chr15 (84034015-84034710)
               

               
               10-717, gnl|Mm7|chr7 (71553826-71554506)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	10-717, gnl\|bosTau2\|chr21 (9784041-9784744)
	10-717, gnl\|Hg17\|chr15 (84034015-84034710)
	10-717, gnl\|Mm7\|chr7 (71553826-71554506)